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The documentation for hyp_dots function says that sizes argument is "Size dots by geneset sizes". This is true if merge = FALSE.
But if merge = TRUE the size of dots actually corresponds to the significance value (pval or fdr). It took me a while to find it by looking at the code. Please update the documentation.
Also I don't see a reason not to show the size legends by default (if sizes = TRUE).
The text was updated successfully, but these errors were encountered:
Just updated the docs - thank you. I think you're right, I will update that function soon to allow sizing by geneset sizes when merging multiple signatures.
The documentation for
hyp_dots
function says thatsizes
argument is "Size dots by geneset sizes". This is true ifmerge = FALSE
.But if
merge = TRUE
the size of dots actually corresponds to the significance value (pval or fdr). It took me a while to find it by looking at the code. Please update the documentation.Also I don't see a reason not to show the size legends by default (if sizes = TRUE).
The text was updated successfully, but these errors were encountered: