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ProtGraph Version 0.3.10 #69

Merged
merged 19 commits into from
Jan 28, 2024
Merged

ProtGraph Version 0.3.10 #69

merged 19 commits into from
Jan 28, 2024

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Luxxii
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@Luxxii Luxxii commented Jun 29, 2023

In thise PR, ProtGraph gets the PTMs updated.

  • Appended all possible PTMs (N and C Terminal Peptide/Protein Modifications)
  • Allows to use multiple PTMs on same sites at once
  • Version Bump to 0.3.10
  • Updated apsw dependency (now available on PyPI)
  • Changed the VC Count for later processing of bpcsr-entries to also count for other features (including VARmod and FIXmod if desired)
  • Added Unique IDs for PROPEP/CHAIN and SIGNAL if there are any.
  • Fixed "bug" in compacting FASTA. It now can work with huge files without loading everything into the RAM (by limiting itself to -n-many entries.)

@Luxxii Luxxii self-assigned this Jun 29, 2023
…t to be added in the graph, the features to be used for counting.

This allows us for further tools to use this information to not only limit on variants, but by arbitrary features
fixes mpc-bioinformatics#67

ProtGraph can now add multiple PTMs (even on same AminoAcids) in various combinations into ProteinGraphs. It can be set for N/C-Terminal Peptide/Protein PTMs as well as on single aminoacids. Documnetation is still missing
@Luxxii Luxxii merged commit d2adc33 into mpc-bioinformatics:master Jan 28, 2024
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