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vcf2maf deal with vcf files with multiple samples #288

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xiw588 opened this issue Jun 25, 2021 · 1 comment
Open

vcf2maf deal with vcf files with multiple samples #288

xiw588 opened this issue Jun 25, 2021 · 1 comment

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@xiw588
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xiw588 commented Jun 25, 2021

Hi, I want to convert my combined vcf file containing multiple samples to maf file. Can vcf2maf directly handle this?

Thank you.

@apinto-helomics
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I had tried to do this previously and was told that a merged.vcf will not work with vcf2maf, instead youll need to run vcf2maf for every sample in your merged vcf

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