Skip to content

v1.12.0

Compare
Choose a tag to compare
@ontresearch ontresearch released this 20 May 10:04
· 11 commits to master since this release

Fixed

  • tandem: Use haplotag 0 in unphased mode.
  • tandem: Don't run consensus if regions set is empty.

Added

  • Models for version 5 basecaller models.
  • Expose sym_indels option for training.
  • Expose --min_mapq minimum mapping quality alignment fitering option for medaka consensus.
  • tandem: Option --ignore_read_groups to ignore read groups present in input file.
  • Wrapper script medaka_consensus_joint and convenience tools (prepare_tagged_bam,
    get_model_dtypes) to facilitate joint polishing with multiple datatypes.