Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Versioning is not correct. #53

Closed
mahesh-panchal opened this issue Jun 9, 2021 · 2 comments
Closed

Versioning is not correct. #53

mahesh-panchal opened this issue Jun 9, 2021 · 2 comments

Comments

@mahesh-panchal
Copy link
Contributor

The versioning is not correct in gaas_fasta_removeSeqFromIDlist.pl

How to reproduce:

docker run -it --rm quay.io/biocontainers/gaas:1.2.0--pl526r35_0 bash
gaas_fasta_removeSeqFromIDlist.pl --help

Output:


 ------------------------------------------------------------------------------
|   Genome Assembly Annotation Service (AGAT) - Version: v1.1.0              |
|   https://github.com/NBISweden/AGAT                                          |
|   National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se         |
 ------------------------------------------------------------------------------
  
< truncated >

General problem:
I need to be able to extract version information reliably when using these scripts in the nf-core modules way.

@Juke34
Copy link
Collaborator

Juke34 commented Jun 9, 2021

It is here https://github.com/NBISweden/GAAS/blob/master/lib/GAAS/GAAS.pm
I had changed AGAT by GAAS (obvious error) but didn't change the version...
You should release a new version v1.2.1

@mahesh-panchal
Copy link
Contributor Author

Updated version (101cda0)

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants