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01. Downloading SRA Toolkit
Andrew Klymenko edited this page May 21, 2024
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Below are the latest releases of various tools and release checksum file.
Compiled binaries/install scripts of May 21, 2024, version 3.1.1:
- CentOS Linux 64 bit architecture - non-sudo tar archive
- Ubuntu Linux 64 bit architecture - non-sudo tar archive
- Cloud - apt-get install script - for Debian and Ubuntu - requires sudo permissions
- Cloud - yum install script - for CentOS - requires sudo permissions
- MacOS x86-64 bit architecture
- MacOS Arm64 bit architecture
- MS Windows 64 bit architecture
- Docker image repository
- md5 checksums
Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome
- Magic-BLAST executables for LINUX, MacOSX, and Windows as well as the source files are available on the FTP site
- Read more about Magic BLAST on the FTP site
Builds of Third Party Software Tools with SRA support:
- HISAT2 version 2.2.1-ngs.3.1.1 - graph-based alignment of next generation sequencing reads to a population of genomes with direct support of SRA, built for:
- NCBI VDB Software Development Kit – May 21, 2024, version 3.1.1 release
- NCBI SRA Toolkit – May 21, 2024, version 3.1.1 release
- NCBI NGS Toolkit – May 21, 2024, version 3.1.1 release
You may validate downloaded files with md5 checksums computed using md5sum -b
The NGS SDK releases are in (https://github.com/ncbi/sra-tools/wiki/09.-Downloading-NGS-SDK)