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01. Downloading SRA Toolkit

Andrew Klymenko edited this page May 21, 2024 · 35 revisions

NCBI SRA Toolkit

Below are the latest releases of various tools and release checksum file.

SRA Toolkit

Compiled binaries/install scripts of May 21, 2024, version 3.1.1:


Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome

  • Magic-BLAST executables for LINUX, MacOSX, and Windows as well as the source files are available on the FTP site
  • Read more about Magic BLAST on the FTP site

Third Party Software

Builds of Third Party Software Tools with SRA support:

  • HISAT2 version 2.2.1-ngs.3.1.1 - graph-based alignment of next generation sequencing reads to a population of genomes with direct support of SRA, built for:

Latest Source Code

File checksums

You may validate downloaded files with md5 checksums computed using md5sum -b


The NGS SDK releases are in (