Bioportal, as a Knowledge Graph.
In this graph pipeline, source data is primarily derived from Bioportal-to-KGX, starting from a 4store dump of the BioPortal ontologies.
The download.yaml contains all the URLs for source data. In this KG project, sources are pre-processed and this component is used for data transfer only.
The transform_utils serve as a passthrough, allowing paths for sources to be stored.
Implementation of the 'cat-merge' function from cat-merge.
python run.py catmerge --merge_all