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Feature: add the attributes dcterms:created and dcterms:modified to classes model #161

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Feature: add the attributes dcterms:created and dcterms:modified to classes model #161

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2a4a3ca
add dcterms namespace
syphax-bouazzouni Nov 3, 2022
f4df352
add the attributes dcterms:created and dcterms:modified to classes model
syphax-bouazzouni Nov 3, 2022
1e318a0
add class date attributes tests
syphax-bouazzouni Dec 17, 2022
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5 changes: 3 additions & 2 deletions lib/ontologies_linked_data/config/config.rb
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Original file line number Diff line number Diff line change
Expand Up @@ -166,8 +166,9 @@ def goo_namespaces
conf.add_namespace(:oboinowl_gen,
RDF::Vocabulary.new("http://www.geneontology.org/formats/oboInOwl#"))
conf.add_namespace(:obo_purl, RDF::Vocabulary.new("http://purl.obolibrary.org/obo/"))
conf.add_namespace(:umls,
RDF::Vocabulary.new("http://bioportal.bioontology.org/ontologies/umls/"))
conf.add_namespace(:umls, RDF::Vocabulary.new("http://bioportal.bioontology.org/ontologies/umls/"))
conf.add_namespace(:dcterms, RDF::Vocabulary.new("http://purl.org/dc/terms/"))

conf.id_prefix = "http://data.bioontology.org/"
conf.pluralize_models(true)
end
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4 changes: 3 additions & 1 deletion lib/ontologies_linked_data/models/class.rb
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Expand Up @@ -77,10 +77,12 @@ def self.urn_id(acronym,classId)

attribute :notes,
inverse: { on: :note, attribute: :relatedClass }
attribute :created, namespace: :dcterms
attribute :modified, namespace: :dcterms

# Hypermedia settings
embed :children, :ancestors, :descendants, :parents
serialize_default :prefLabel, :synonym, :definition, :cui, :semanticType, :obsolete, :matchType, :ontologyType, :provisional # an attribute used in Search (not shown out of context)
serialize_default :prefLabel, :synonym, :definition, :cui, :semanticType, :obsolete, :matchType, :ontologyType, :provisional, :created, :modified # an attribute used in Search (not shown out of context)
serialize_methods :properties, :childrenCount, :hasChildren
serialize_never :submissionAcronym, :submissionId, :submission, :descendants
aggregates childrenCount: [:count, :children]
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2 changes: 2 additions & 0 deletions test/data/ontology_files/BRO_v3.4.owl
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Expand Up @@ -618,6 +618,8 @@
<core:prefLabel rdf:datatype="&xsd;string">Activity</core:prefLabel>
<desc:definition rdf:datatype="&xsd;string">Activity of interest that may be related to a BRO:Resource.</desc:definition>
<core:altLabel>activities</core:altLabel>
<dct:created rdf:datatype="xsd:dateTime">2015-06-29</dct:created>
<dct:modified rdf:datatype="xsd:dateTime">2015-10-01</dct:modified>
</owl:Class>


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21 changes: 21 additions & 0 deletions test/models/test_class.rb
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Expand Up @@ -351,4 +351,25 @@ def test_xml_literal_serialization
assert_equal String, xml_comment.class
assert_equal comment, xml_comment
end

def test_fetch_date_attributes
acronym = 'BRO'
# Create a 1st version for BRO
submission_parse(acronym, "BRO",
"./test/data/ontology_files/BRO_v3.4.owl", 1,
process_rdf: true, index_search: false,
run_metrics: false, reasoning: false,
diff: true, delete: false)

os = LinkedData::Models::OntologySubmission.where(ontology: [ acronym: acronym ],
submissionId: 1).all
assert(os.length == 1)
os = os[0]

class_id = RDF::URI.new "http://bioontology.org/ontologies/Activity.owl#Activity"
cls = LinkedData::Models::Class.find(class_id).in(os).include(:created, :modified).first
assert_equal '2015-06-29', cls.created
assert_equal '2015-10-01', cls.modified

end
end