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Update installation pages for Read the docs
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.. _admin_install: | ||
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Administrator installation instructions | ||
--------------------------------------- | ||
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If you need to deploy NEST on a machine | ||
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* Check out our guides to :ref:`optimizing NEST for HPC systems <hpc_index>` | ||
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Configure HPC systems | ||
~~~~~~~~~~~~~~~~~~~~~ | ||
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Here are some :ref:`configuration options <hpc_install>` that may be useful on supercomputers and large clusters. | ||
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Docker install | ||
~~~~~~~~~~~~~~ | ||
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Check out the :ref:`docker installation instructions <docker>`. | ||
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See the `nest-docker README <https://github.com/nest/nest-docker>`_ to find out more. | ||
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.. _conda_forge_install: | ||
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Conda forge install | ||
=================== | ||
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1. To keep your conda setup tidy, we recommend that you install NEST into | ||
a separate `conda environment <https://docs.conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html>`_ | ||
together with Python packages that you will use when working with NEST; | ||
see also our :ref:`conda_tips`. | ||
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To install the latest version of NEST in a new environment called ``ENVNAME``, just run | ||
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.. code-block:: sh | ||
conda create --name ENVNAME -c conda-forge nest-simulator | ||
To install additional packages into the environment, just list them together with ``nest-simulator``. | ||
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.. code-block:: sh | ||
conda create --name ENVNAME -c conda-forge nest-simulator jupyterlab seaborn | ||
#. To see all NEST versions available via conda, either run | ||
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.. code-block:: sh | ||
conda search -c conda-forge nest-simulator | ||
or browse the `conda forge file list | ||
<https://anaconda.org/conda-forge/nest-simulator/files>`_ (note | ||
there are multiple pages). To install, e.g., NEST 2.18.0, run | ||
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.. code-block:: sh | ||
conda create --name nest_2_18_0 -c conda-forge nest-simulator=2.18.0=* | ||
The syntax for this install follows the pattern: ``nest-simulator=<version>=<build_string>``. | ||
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#. Activate your environment: | ||
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.. code-block:: sh | ||
conda activate ENVNAME | ||
#. Note the following: | ||
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- We currently provide NEST with thread-based parallelization on conda. This should suffice for most | ||
uses on personal computers. | ||
- Until dedicated conda builds for Apple's M1 chip (arm64) become available, you should expect relatively | ||
poor performance on computers with the M1 chip. You need to :ref:`build NEST yourself <mac_install>` on | ||
M1 systems for good performance. | ||
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.. _condaenv: | ||
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Install from source in a conda environment | ||
========================================== | ||
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* Create a conda environment from the `environment.yml <https://github.com/nest/nest-simulator/blob/master/environment.yml>`_ file. | ||
We recommend specifying a dedicated location (``-p <path/to/conda/env>``) for your environment. | ||
See the `conda documentation <https://docs.conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html#specifying-a-location-for-an-environment>`_ | ||
on using a custom location rather than the default envs folder. | ||
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.. code-block:: sh | ||
conda env create -f nest-simulator/environment.yml --p <path/to/conda/env> | ||
conda activate <path/to/conda/env> | ||
* Create a build directory: | ||
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.. code-block:: sh | ||
mkdir build_dir | ||
* Change to the build directory: | ||
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.. code-block:: sh | ||
cd build_dir | ||
* Configure NEST. Add the cmake option ``-CDMAKE_INSTALL_PREFIX:PATH=$CONDA_PREFIX`` to link nest to your active conda environment. | ||
You may need additional ``cmake`` options (see :ref:`cmake_options`). | ||
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.. code-block:: sh | ||
cmake -DCMAKE_INSTALL_PREFIX:PATH=$CONDA_PREFIX </path/to/NEST/src> | ||
* Compile and install NEST: | ||
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.. code-block:: sh | ||
make | ||
make install | ||
make installcheck | ||
For your convenience, a shell script setting all required environment variables is provided in | ||
``<nest_install_dir>/bin/nest_vars.sh``. Setting the environment variables in your active shell session requires | ||
sourcing the script: | ||
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.. code-block:: sh | ||
source <nest_install_dir>/bin/nest_vars.sh | ||
.. note:: | ||
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To build the developer or user documentation see :ref:`doc_workflow` | ||
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.. _dev_install: | ||
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Install NEST from source | ||
========================= | ||
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.. note:: | ||
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Please see our :ref:`development workflows and guidelines <developer_space>`, if you need | ||
a refresher in git or need to review the coding or documentation guidelines. | ||
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* Clone nest-simulator from Github `<https://github.com/nest/nest-simulator>`_: | ||
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.. code-block:: sh | ||
git clone git@github.com:<your-username>/nest-simulator.git | ||
* or download the tarball `here <https://github.com/nest/nest-simulator/releases>`_ and unpack it: | ||
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.. code-block:: sh | ||
tar -xzvf nest-simulator-x.y.tar.gz | ||
We have provided an `environment.yml <https://github.com/nest/nest-simulator/blob/master/environment.yml>`_ | ||
file that contains all possible packages needed for NEST development. | ||
See our instructions for installing NEST from source in a :ref:`conda environment <condaenv>` | ||
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OR | ||
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If you want to install NEST without any environment, see the :ref:`instructions here <noenv>`. | ||
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What gets installed where | ||
------------------------- | ||
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By default, everything will be installed to the subdirectories ``<nest_install_dir>/{bin,lib,share}``, where | ||
``/install/path`` is the install path given to ``cmake``: | ||
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- Executables ``<nest_install_dir>/bin`` | ||
- Dynamic libraries ``<nest_install_dir>/lib/`` | ||
- SLI libraries ``<nest_install_dir>/share/nest/sli`` | ||
- SLI documentation ``<nest_install_dir>/share/doc/nest`` | ||
- Examples ``<nest_install_dir>/share/doc/nest/examples`` | ||
- PyNEST ``<nest_install_dir>/lib/pythonX.Y/site-packages/nest`` | ||
- PyNEST examples ``<nest_install_dir>/share/doc/nest/examples/pynest`` | ||
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If you want to run the ``nest`` executable or use the ``nest`` Python module without providing explicit paths, you | ||
have to add the installation directory to your search paths. | ||
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