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Generalize double and integer synapse parameters in connect_arrays() #2298

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42 changes: 29 additions & 13 deletions nestkernel/connection_manager.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -578,39 +578,51 @@ nest::ConnectionManager::connect_arrays( long* sources,
sw_construction_connect.start();

// Mapping pointers to the first parameter value of each parameter to their respective names.
std::map< Name, double* > param_pointers;
// The bool is whether the value is an integer or not, which is determined at a later point.
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std::map< Name, std::pair< double*, bool > > param_pointers;
if ( p_keys.size() != 0 )
{
size_t i = 0;
for ( auto& key : p_keys )
{
// Shifting the pointer to the first value of the parameter.
param_pointers[ key ] = p_values + i * n;
param_pointers[ key ] = std::make_pair( p_values + i * n, false );
++i;
}
}

const auto synapse_model_id = kernel().model_manager.get_synapse_model_id( syn_model );
const auto syn_model_defaults = kernel().model_manager.get_connector_defaults( synapse_model_id );

// Dictionary holding additional synapse parameters, passed to the connect call.
std::vector< DictionaryDatum > param_dicts;
param_dicts.reserve( kernel().vp_manager.get_num_threads() );
for ( thread i = 0; i < kernel().vp_manager.get_num_threads(); ++i )
{
param_dicts.emplace_back( new Dictionary );
for ( auto& param_keys : p_keys )
for ( auto& param_key : p_keys )
{
if ( Name( param_keys ) == names::receptor_type )
const Name param_name = param_key; // Convert string to Name
// Check that the parameter exists for the synapse model.
const auto syn_model_default_it = syn_model_defaults->find( param_name );
if ( syn_model_default_it == syn_model_defaults->end() )
{
( *param_dicts[ i ] )[ param_keys ] = Token( new IntegerDatum( 0 ) );
throw BadParameter( syn_model + " does not have parameter " + param_key );
}

// If the default value is an integer, the synapse parameter must also be an integer.
if ( dynamic_cast< IntegerDatum* >( syn_model_default_it->second.datum() ) != nullptr )
{
param_pointers[ param_key ].second = true;
( *param_dicts[ i ] )[ param_key ] = Token( new IntegerDatum( 0 ) );
}
else
{
( *param_dicts[ i ] )[ param_keys ] = Token( new DoubleDatum( 0.0 ) );
( *param_dicts[ i ] )[ param_key ] = Token( new DoubleDatum( 0.0 ) );
}
}
}

const index synapse_model_id = kernel().model_manager.get_synapse_model_id( syn_model );

// Increments pointers to weight and delay, if they are specified.
auto increment_wd = [weights, delays]( decltype( weights ) & w, decltype( delays ) & d ) {
if ( weights != nullptr )
Expand Down Expand Up @@ -640,7 +652,7 @@ nest::ConnectionManager::connect_arrays( long* sources,
auto d = delays;
double weight_buffer = numerics::nan;
double delay_buffer = numerics::nan;
int index_counter = 0;
int index_counter = 0; // Index of the current connection, for connection parameters

for ( ; s != sources + n; ++s, ++t, ++index_counter )
{
Expand Down Expand Up @@ -674,16 +686,20 @@ nest::ConnectionManager::connect_arrays( long* sources,
for ( auto& param_pointer_pair : param_pointers )
{
// Increment the pointer to the parameter value.
auto* param = param_pointer_pair.second + index_counter;
const auto param_pointer = param_pointer_pair.second.first;
const auto is_int = param_pointer_pair.second.second;
auto* param = param_pointer + index_counter;

// Receptor type must be an integer.
if ( param_pointer_pair.first == names::receptor_type )
// Integer parameters are stored as IntegerDatums.
if ( is_int )
{
const auto rtype_as_long = static_cast< long >( *param );

if ( *param > 1L << 31 or std::abs( *param - rtype_as_long ) > 0 ) // To avoid rounding errors
{
throw BadParameter( "Receptor types must be integers." );
const auto msg = std::string( "Expected integer value for " ) + param_pointer_pair.first.toString()
+ ", but got double.";
throw BadParameter( msg );
}

// Change value of dictionary entry without allocating new datum.
Expand Down
24 changes: 24 additions & 0 deletions testsuite/pytests/test_connect_arrays.py
Original file line number Diff line number Diff line change
Expand Up @@ -250,6 +250,30 @@ def test_connect_arrays_additional_synspec_params(self):
self.assertEqual(c.alpha, a)
self.assertEqual(c.tau, tau)

def test_connect_arrays_syn_lbl(self):
"""Connecting NumPy arrays with synapse label"""
n = 10
nest.Create('iaf_psc_alpha', n)
sources = np.arange(1, n+1, dtype=np.uint64)
targets = self.non_unique
weights = np.ones(len(sources))
delays = np.ones(len(sources))
syn_model = 'static_synapse_lbl'
syn_label = 2

nest.Connect(sources, targets, conn_spec='one_to_one',
syn_spec={'weight': weights, 'delay': delays, 'synapse_model': syn_model,
'synapse_label': syn_label})

conns = nest.GetConnections()

for s, t, w, d, lbl, c in zip(sources, targets, weights, delays, len(conns)*[syn_label], conns):
self.assertEqual(c.source, s)
self.assertEqual(c.target, t)
self.assertEqual(c.weight, w)
self.assertEqual(c.delay, d)
self.assertEqual(c.synapse_label, lbl)

def test_connect_arrays_float_rtype(self):
"""Raises exception when not using integer value for receptor_type"""
n = 10
Expand Down