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Version 20.10.0

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@pditommaso pditommaso released this 01 Nov 17:28
· 2166 commits to master since this release
539a22b
  • Add warning for AWS Batch mem request lower than 4 MB [e9240fc]
  • Add support for Bitbucket tags and branches retrieval [5083066]
  • Add support for Tower client bearer authentication [532282a]
  • Add support for Java 15 [b1f4888]
  • Fix issue with docker images tagged by SHA #1777
  • Fix Skip FS lock when Conda dir exist #1771
  • Fix build with Gradle 6.7 [8d7227f]

(from 20.09.1-edge)

  • Prevent USR1 signal to stop jobs #1753
  • Add -main-script cli option [702ff64]
  • Improve Singularity image file caching #1706 [dd92772]
  • Fix unexpected default GLS action flags #1749
  • Patch unpexpected error on tower serialization [f922324]

(from 20.09.0-edge)

  • Fix invalid error message on missing process #1719 [fc607f1]
  • Deduplicate GS file + parallel up/downloads [29d3708]
  • Deduplicate S3 file uploads [0b65d61]
  • Fix issue on GS path composition [276f0ed]
  • Add NXF_PARAMS_FILE env var [2e3c923]
  • Allow configurable container mounts [8dc0adf]
  • Refactor common Bash helper functions [22a0ff3] [502309b]
  • Fix race condition creating FTP file system #1725
  • Fix invalid checkWarn method invocation [ba052a0]
  • Move makeDigest into build.gradle file [a2b5de8]
  • Patch use of GString for fromSra apiKey option [a8b81ad]

(from 20.08.1-edge)

  • Add variable NXF_CONFIG_FILE [d15edcb]

(from 20.08.0-edge)

  • Merge Groovy3 runtime and support for Java 12/13/14
  • Use repository URL instead of Git clone URL [102f8b0]
  • Fix Invalid exception capture for missing config [8c7accc]
  • Fix podman issue on duplicate mounts #1710 [d0cc38d]
  • Fix FromSra illegal character error #1700 [a45decf]
  • Fix Allow custom SCM file location #1657 [7c27f89]
  • Fix dynamic executors loading [7b9ce82]
  • Fix missing newline on cmd log stdout/err #1705 [1416a38]
  • Fix k8s timeline start #1687 [24dff87]
  • Remove unneeded parentheses from stdout declaration [dc029c0]
  • Merge execution logs command docs [577ec74]
  • Passing exact memory to TES executor in GiB #1696 [c8a1554]
  • Improve docs replacing suscribe{println it} with view() [f84ccb6] [cb2d607]
  • Use current environment Bash #1598 #1614 [e70ef87]
  • Include GA4GH support into the standalone binary (make pack) #1666 [e2175d4]
  • Update Bitbucket docs [b9b57f8]
  • Clone/Pull submodules recursively #1615 [5f20ab6]
  • Bump nf-ignite to version 1.1.0