Version 0.23.4

@pditommaso pditommaso released this Feb 24, 2017 · 5 commits to master since this release

  • Fixed Show a warning message when accessing undefined parameters #293
  • Fixed Staging input files in a subfolder changes their names when they are symlinks #292
  • Fixed NPE accessing foreign files
  • Added column char to list of path escaped chars
  • Fixed Boothook script fails on Ubuntu 16.04


Version 0.23.3

@pditommaso pditommaso released this Feb 9, 2017 · 5 commits to master since this release

  • Fixed Job termination is not recognised if the starter file is not created #268
  • Fixed Allow NF console to resume process executions (second take) #280
  • Fixed PublishDir may throw a FileAlredyExistsException #283
  • Increased logger file appender buffer size to 64kb
  • Updated Logback to version 1.1.10
  • Updated copyright info
  • Fixed NXF_DEBUG level


Version 0.23.2

@pditommaso pditommaso released this Feb 2, 2017 · 19 commits to master since this release

  • Improved history lock error message
  • Fixed typo in warning message
  • Added cleanup to list of accepted directives
  • Added NXF_OWNER to kubernetes executor
  • Fixed Function nxf_kill is not invoked properly on a containerised process #275
  • Fixed Pending grid jobs are not cancelled upon pipeline interruption
  • Documented that the toSortedList operator can accept a comparator closure #277


Version 0.23.1

@pditommaso pditommaso released this Jan 23, 2017 · 29 commits to master since this release

  • Fixed FixOwnership flag break non BASH scripts/templates #270
  • Fixed Fixed PBS Executor should not have parenthesis #271
  • Fixed Function nxf_kill is not invoked properly on process termination #275
  • Fixed Timeline.html is not working on IE11 #272
  • Fixed Merge process specific extended properties with the ones defined in the default scope #273
  • Fixed Using storeDir and publishDir in the same process yields unexpected results #266


Version 0.23.0

@pditommaso pditommaso released this Dec 13, 2016 · 43 commits to master since this release

  • Added support for Singularity containers #252
  • Added support for HTTP/S and FTP files (read-only)
  • Fixed stream close leak while copy foreign file to local file system
  • Fixed Task scheduling may hang while checking for job completion #261
  • Fixed Specifying the keyFile cloud config attribute result in an error #263
  • Added support for multiple target channels in tap operator #255
  • Added uri property to Path and File objects
  • Made NXF_SCRATCH variable accessible to beforeScript handler


Version 0.22.6

@pditommaso pditommaso released this Dec 4, 2016 · 87 commits to master since this release

  • Fixed Script execution terminates before all operators complete #259
  • Fixed A script variable with the same name of a global variable invalidate process resume #254
  • Fixed when is not recognised when used before an input and script is not declared
  • Fixed count operator hung when applied to a dataflow variable
  • Added warning message when an input/output set defines only one component #216 #251
  • Reduced log verbosity of Ignite Scheduler classes


Version 0.22.5

@pditommaso pditommaso released this Nov 17, 2016 · 87 commits to master since this release

  • Fixed QueueSize=1 doesn't handle multi-cpu processes #246
  • Fixed Accessing to a not defined script params should raise an error #243
  • Fixed An input channel evaluating to null results in a misleading error message #242
  • Fixed Use of publicDnsName should failover to IP if no name is available #240
  • Fixed Use of yum in cloud boothook may cause problems #239
  • Fixed Execution hang when an operator invokes the exit function and no processes have run
  • Fixed fromFilePairs does not match patterns containing curly brackets w/o a star wild character
  • Added -dump-hashes command line option to print task key hash keys #211
  • Improved logging


Version 0.22.4

@pditommaso pditommaso released this Nov 4, 2016 · 105 commits to master since this release

  • Added --no-requeue flag to SLURM job submission
  • Report log content when a wrapper script execution fail #213
  • Improved error message when cache DB cannot be created
  • Logging error track trace on task re-submit failure
  • Fixed Channel.fromPath throws an exception when the argument is a S3 path
  • Modified make_temp so that uses NXF_TEMP when defined


Version 0.22.3

@pditommaso pditommaso released this Oct 12, 2016 · 124 commits to master since this release

  • Fixed PBS qsub fails when the job name is longer than 15 chars #228
  • Fixed Spread operator doesn't connect channels in DAG #231
  • Fixed amazon prices file format parser
  • Added Cleanup scratch dir upon process completion #230
  • Added optional flag to output file declaration
  • Added region option to cloud command
  • Added Check for missing instance type description


Version 0.22.2

@pditommaso pditommaso released this Oct 3, 2016 · 145 commits to master since this release

  • Fixed Copy input files to scratch directory #197
  • Fixed PBS qsub fails when the job name starts with a dot #228
  • Fixed issue when staging-out a symlink output file
  • Fixed log warning when running a script in the console