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a little quirk (bug?) due to formatting in biom convert
#43
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biom convert
First, please ignore if this was already fixed. I'm using I wanted to add that in the next step, after the
But there isn't any Cheers! |
Looks like |
Michelle is such a trouble maker... |
Sometimes I have use for
.csv
formats, others.tsv
. Often when I'm working in AMPTK I use.csv
formats because I find it easier to filter some things manually.What I noticed is that if you set the output to
.csv
format in theamptk filter
step, then runamptk taxonomy
with that.csv
file, you don't generate a.biom
file.It fails, apparently, because the
biom convert
argument doesn't recognize a comma-separated file! I converted it to a tab-delimited file and it worked just fine.The text was updated successfully, but these errors were encountered: