About running time

[awesomedeer]

Hi!
Is it normal that samtools is sleeping and using less memory and threads?
Because when I check the status, it shows like below:
PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND
167899 song 20 0 9892424 4.793g 968 S 0.3 5.2 42:06.05 samtools

I am using 1.2.4.

[moold]

I am not sure, but you can use your own alignment pipeline, see here

[awesomedeer]

Thanks for replying. I will have a try and give you feedback.

[awesomedeer]

It works perfect as you suggested. Thanks a lot!