erro occurred in test

[lifan18]

Dear NextPolish developer,

Thank you for providing us with such a nice tool.

However when I run the test in NextPolish folder, erro was occurred as following,

"File "../nextPolish", line 44
print '\033[35mPlease update to the latest version: %s, current version: %s \033[0m' % (latest, ver)
^
SyntaxError: invalid syntax"

I don't know why. Could you give some advices to me?

Thank you again.

Ar

[moold]

Hi, please check your python version using python --version. Currently, NextPolish only support python2.7, I will move it to python3 in the future.

[lifan18]

Thank you.

My python version is Python 3.7.3 now. I am not sure other software would rely on this version. So, how could I fix this problem?

[moold]

Maybe you can install python2.7 in your personal directory.

[lifan18]

Thank you so much.

I went through that step. But, new error came out qsub the test task.

"[ERROR] 2019-10-16 20:39:14,367 polish_genome failed: please check the following logs:
[ERROR] 2019-10-16 20:39:14,368 */NextPolish/test_data/01_rundir/00.score_chain/04.polish.ref.sh.work/polish_genome0/nextPolish.sh.e
[ERROR] 2019-10-16 20:39:14,368 */NextPolish/test_data/01_rundir/00.score_chain/04.polish.ref.sh.work/polish_genome1/nextPolish.sh.e"

---

nextPolish.sh.e* details:
"Traceback (most recent call last):
File "/NextPolish/lib/nextPolish.py", line 83, in
P = CDLL(os.path.dirname(os.path.realpath(file)) + '/' + "nextPolish.so")
File "/NextPolish/lib/python2.7/ctypes/init.py", line 366, in init
self._handle = _dlopen(self._name, mode)
OSError: liblzma.so.5: cannot open shared object file: No such file or directory"

[moold]

It seems your system lacks the Liblzma.so.5 lib, may be you should install it firstly.