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Update zika build
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trvrb committed Sep 28, 2016
1 parent 1c5e059 commit 1955fdd
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion zika/zika.py
Expand Up @@ -36,7 +36,7 @@
zika.load_sequences(fields=fasta_fields)
zika.seqs.filter(lambda s: s.attributes['date']>=datetime(2012,1,1).date() and
s.attributes['date']< datetime(2017,1,1).date())
dropped_strains = ["THA/PLCal_ZV/2013", "PLCal_ZV"]
dropped_strains = ["THA/PLCal_ZV/2013", "PLCal_ZV", "Dominican_Republic/2016/PD2"]
zika.seqs.filter(lambda s: s.id not in dropped_strains)
zika.seqs.subsample(category = lambda x:(x.attributes['region'],
x.attributes['date'].year,
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