Schema updates #1298
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Schema updates #1298
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A number of parts of the auspice-config have identical (or almost-identical) shape to those in the resulting dataset JSON, although the actual data may be modified as it passes through `augur export v2`. Rather than referencing the entire auspice-config schema and pruning down properties, which I don't actually think is possible in jsonschema, I chose to use $refs at a more fine grained level which I find easier to read. The actual schema definitions should be unchanged by this commit, although comments / descriptions have been improved.
These work fine in Auspice. While the 'colorings' property is optional, `augur export v2` will always set a (possibly empty) array. I also chose to allow the auspice config file to have an empty colorings definition, which in practice behaves the same as leaving it out. Addresses comment in #273 <#273 (comment)>
Removes previously valid string patterns which were never used within augur and would result in unexpected behaviour in auspice. Also updates the patternProperties of CDSs to match that used in the genome_annotations (schema-annotations.json)
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Closing as these commits are in #1299 |
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Various (relatively minor) improvements to the schemas. See commit messages for details.