Commits on Mar 16, 2024

1. Write compound (segmented) sequence locations …

   Given a SeqFeqture with a CompoundLocation we now correctly write out
   the CDS/gene using segmented coordinates. Auspice can now handle such
   coordinates (see <nextstrain/auspice#1684> and
   <#1281> for the corresponding
   schema updates).
   
   Note that the translations (via augur translate) of complex CDSs did not
   need modifying as they already used BioPython's SeqFeature.extract
   method.
   
   Supersedes #1333

   

   jameshadfield committed Mar 16, 2024
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