Add pathogen-embed as a first-party dependency #71
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1 task
victorlin
approved these changes
Jun 20, 2024
| @@ -45,6 +45,7 @@ requirements: | |||
| - nextclade2 | |||
| - nextclade | |||
| - nextstrain-cli | |||
| - pathogen-embed | |||
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(non-blocking)
Noting from the run summary that this added 11 packages for ubuntu-22.04 13 packages for macos-12 (macos has an extra libhwloc and libxml2).
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Description of proposed changes
Adds pathogen-embed to base image, so we can use its tools for analysis of reassortment in our influenza builds.
Related issue(s)
nextstrain/docker-base#221
Checklist
nextstrain update condawith the recipe from this PR and confirmed that the output matches my PyPI installation of the same tools