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Update Zika readme
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trvrb committed May 31, 2017
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3. Upload to vdb database
* `python vdb/zika_upload.py -db vdb -v zika --source genbank --locus genome --fname GenomeFastaResults.fasta`

### [ZiBRA sequences](https://github.com/zibraproject/zibraproject.github.io/tree/master/data/consensus)

* Replace `^>([^|]+)\|([^|]+)\|([^|]+)\|([^|]+)\|(\S+) .+` with `>\1|\1|\5|brazil|\4|\3`
* Replace `^>([^|]+)\|\d.+` with `>\1|\1|XXXX-XX-XX|brazil|brazil|brazil`

Upload with:

python vdb/zibra_upload.py -db vdb -v zika --source zibra --locus genome --authors "Zika in Brazil Real-time Analysis Consortium" --fname BRA_ZIBRA_Good.fasta --url https://github.com/zibraproject/zibraproject.github.io/tree/master/data/consensus
python vdb/zibra_upload.py -db vdb -v zika --source zibra --locus genome --authors "Zika in Brazil Real-time Analysis Consortium" --fname BRA_ZIBRA_Partial.fasta --url https://github.com/zibraproject/zibraproject.github.io/tree/master/data/consensus

### [Fred Hutch sequences](https://github.com/blab/zika-usvi/tree/master/data)

Upload with:
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