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Reduce clade count threshold #98

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May 6, 2024
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@trvrb trvrb commented May 6, 2024

This reduces the threshold for a clade to be included (and not wrapped into "other") from 5000 total sequences to 2000 total sequences. This causes clade 24B to be broken out in the current data.

clades-threshold

There may be other changes to thresholds to pull in more geography, but I think this is a nice simple change to keep up with decreased sequencing volume.

This reduces the threshold for a clade to be included (and not wrapped into "other") from 5000 total sequences to 2000 total sequences. This causes clade 24B to be broken out in the current data.
@trvrb trvrb requested a review from joverlee521 May 6, 2024 21:20
@joverlee521 joverlee521 merged commit fb9c7bb into main May 6, 2024
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@joverlee521 joverlee521 deleted the reduce-clade-count-threshold branch May 6, 2024 21:33
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Confirmed that 24B is now showing at https://nextstrain.org/sars-cov-2/forecasts

Screenshot 2024-05-07 at 9 43 51 AM

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