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Merge pull request #1104: Group by week for 1m/2m Asia builds
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@victorlin
victorlin committed May 2, 2024
2 parents efc0b81 + 067fc5e commit 3ab3ed5
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Showing 3 changed files with 24 additions and 24 deletions.
16 changes: 8 additions & 8 deletions nextstrain_profiles/nextstrain-gisaid-21L/builds.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -313,25 +313,25 @@ subsampling:
exclude: "--exclude-where 'region=Asia'"
# Recent focal samples for Asia
asia_recent:
group_by: "division year month"
group_by: "division week"
max_sequences: 1200
min_date: "--min-date 1M"
exclude: "--exclude-where 'region!=Asia' 'country=China' 'country=India'"
# Recent focal samples for China
china_recent:
group_by: "division year month"
group_by: "division week"
max_sequences: 800
max_date: "--min-date 1M"
exclude: "--exclude-where 'country!=China'"
# Recent focal samples for India
india_recent:
group_by: "division year month"
group_by: "division week"
max_sequences: 800
max_date: "--min-date 1M"
exclude: "--exclude-where 'country!=India'"
# Early contextual samples from the rest of the world
context_recent:
group_by: "country year month"
group_by: "country week"
max_sequences: 700
min_date: "--min-date 1M"
exclude: "--exclude-where 'region=Asia'"
Expand Down Expand Up @@ -370,25 +370,25 @@ subsampling:
exclude: "--exclude-where 'region=Asia'"
# Recent focal samples for Asia
asia_recent:
group_by: "division year month"
group_by: "division week"
max_sequences: 1200
min_date: "--min-date 2M"
exclude: "--exclude-where 'region!=Asia' 'country=China' 'country=India'"
# Recent focal samples for China
china_recent:
group_by: "division year month"
group_by: "division week"
max_sequences: 800
max_date: "--min-date 2M"
exclude: "--exclude-where 'country!=China'"
# Recent focal samples for India
india_recent:
group_by: "division year month"
group_by: "division week"
max_sequences: 800
max_date: "--min-date 2M"
exclude: "--exclude-where 'country!=India'"
# Early contextual samples from the rest of the world
context_recent:
group_by: "country year month"
group_by: "country week"
max_sequences: 700
min_date: "--min-date 2M"
exclude: "--exclude-where 'region=Asia'"
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16 changes: 8 additions & 8 deletions nextstrain_profiles/nextstrain-gisaid/builds.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -305,25 +305,25 @@ subsampling:
exclude: "--exclude-where 'region=Asia'"
# Recent focal samples for Asia
asia_recent:
group_by: "division year month"
group_by: "division week"
max_sequences: 1200
min_date: "--min-date 1M"
exclude: "--exclude-where 'region!=Asia' 'country=China' 'country=India'"
# Recent focal samples for China
china_recent:
group_by: "division year month"
group_by: "division week"
max_sequences: 800
max_date: "--min-date 1M"
exclude: "--exclude-where 'country!=China'"
# Recent focal samples for India
india_recent:
group_by: "division year month"
group_by: "division week"
max_sequences: 800
max_date: "--min-date 1M"
exclude: "--exclude-where 'country!=India'"
# Early contextual samples from the rest of the world
context_recent:
group_by: "country year month"
group_by: "country week"
max_sequences: 700
min_date: "--min-date 1M"
exclude: "--exclude-where 'region=Asia'"
Expand Down Expand Up @@ -362,25 +362,25 @@ subsampling:
exclude: "--exclude-where 'region=Asia'"
# Recent focal samples for Asia
asia_recent:
group_by: "division year month"
group_by: "division week"
max_sequences: 1200
min_date: "--min-date 2M"
exclude: "--exclude-where 'region!=Asia' 'country=China' 'country=India'"
# Recent focal samples for China
china_recent:
group_by: "division year month"
group_by: "division week"
max_sequences: 800
max_date: "--min-date 2M"
exclude: "--exclude-where 'country!=China'"
# Recent focal samples for India
india_recent:
group_by: "division year month"
group_by: "division week"
max_sequences: 800
max_date: "--min-date 2M"
exclude: "--exclude-where 'country!=India'"
# Early contextual samples from the rest of the world
context_recent:
group_by: "country year month"
group_by: "country week"
max_sequences: 700
min_date: "--min-date 2M"
exclude: "--exclude-where 'region=Asia'"
Expand Down
16 changes: 8 additions & 8 deletions nextstrain_profiles/nextstrain-open/builds.yaml
View file
Original file line number Diff line number Diff line change
Expand Up @@ -305,25 +305,25 @@ subsampling:
exclude: "--exclude-where 'region=Asia'"
# Recent focal samples for Asia
asia_recent:
group_by: "division year month"
group_by: "division week"
max_sequences: 1200
min_date: "--min-date 1M"
exclude: "--exclude-where 'region!=Asia' 'country=China' 'country=India'"
# Recent focal samples for China
china_recent:
group_by: "division year month"
group_by: "division week"
max_sequences: 800
max_date: "--min-date 1M"
exclude: "--exclude-where 'country!=China'"
# Recent focal samples for India
india_recent:
group_by: "division year month"
group_by: "division week"
max_sequences: 800
max_date: "--min-date 1M"
exclude: "--exclude-where 'country!=India'"
# Early contextual samples from the rest of the world
context_recent:
group_by: "country year month"
group_by: "country week"
max_sequences: 700
min_date: "--min-date 1M"
exclude: "--exclude-where 'region=Asia'"
Expand Down Expand Up @@ -362,25 +362,25 @@ subsampling:
exclude: "--exclude-where 'region=Asia'"
# Recent focal samples for Asia
asia_recent:
group_by: "division year month"
group_by: "division week"
max_sequences: 1200
min_date: "--min-date 2M"
exclude: "--exclude-where 'region!=Asia' 'country=China' 'country=India'"
# Recent focal samples for China
china_recent:
group_by: "division year month"
group_by: "division week"
max_sequences: 800
max_date: "--min-date 2M"
exclude: "--exclude-where 'country!=China'"
# Recent focal samples for India
india_recent:
group_by: "division year month"
group_by: "division week"
max_sequences: 800
max_date: "--min-date 2M"
exclude: "--exclude-where 'country!=India'"
# Early contextual samples from the rest of the world
context_recent:
group_by: "country year month"
group_by: "country week"
max_sequences: 700
min_date: "--min-date 2M"
exclude: "--exclude-where 'region=Asia'"
Expand Down

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