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Work on ncov to highlight currently circulating viruses
enhancement
New feature or request
#1143
opened Aug 16, 2024 by
genehack
Use weighted sampling
enhancement
New feature or request
#1141
opened Aug 14, 2024 by
victorlin
2 of 4 tasks
Improve / standardize the way that we pass through default parameters and build-specific parameters
enhancement
New feature or request
#1131
opened Jul 26, 2024 by
trvrb
Port CI to New feature or request
pathogen-repo-ci
GH Action workflow
enhancement
#1109
opened May 24, 2024 by
genehack
representation of a nuc conversion do not point a conversion on the genome
bug
Something isn't working
#1107
opened May 7, 2024 by
huzuner
can't install to native
needs information
Requires information from the submitter
#1053
opened Mar 27, 2023 by
shujiuli
dev: Document example accepted docker image formats for action
enhancement
New feature or request
#1051
opened Mar 17, 2023 by
corneliusroemer
after skip_diagnostics: true modification. next strain fails
bug
Something isn't working
#1035
opened Dec 1, 2022 by
Valentin-Bio-zz
Discussion: Do we still need the Issue mentioned on Nextstrain Discussions
snp_clusters
param for diagnostics
rule?
source: discussion forum
#1017
opened Oct 17, 2022 by
joverlee521
ENH: Simple reversion coloring to allow inspection of interesting/problematic parts of tree
enhancement
New feature or request
#1015
opened Oct 14, 2022 by
corneliusroemer
ENH: Reconstruct Nextclade Pango Lineage on internal nodes
enhancement
New feature or request
#1011
opened Oct 6, 2022 by
corneliusroemer
feat: WDL overhaul for Dockstore and Terra
enhancement
New feature or request
#1005
opened Sep 26, 2022 by
j23414
5 of 8 tasks
ENH: Add S1 mutations, reversion count and other branch colorings
enhancement
New feature or request
#985
opened Jul 24, 2022 by
corneliusroemer
Delete pre-computed, downloaded input files on workflow completion on AWS Batch
#961
opened Jun 10, 2022 by
tsibley
Memory resource constraints are not passed to IQ-TREE (via Something isn't working
augur tree
)
bug
#949
opened May 17, 2022 by
AdrianLimaG
annotate_metadata_with_index
raises ValueError
when dtypes don't match
bug
#948
opened May 13, 2022 by
joverlee521
Fetching Open workflow intermediate build assets over S3 gives a 403 error in a really simple setup
bug
Something isn't working
#909
opened Apr 10, 2022 by
sacundim
Document color schemes
enhancement
New feature or request
source: office hours
Issue mentioned during office hours
#901
opened Mar 29, 2022 by
huddlej
Update configuration guide
documentation
Improvements or additions to documentation
#900
opened Mar 28, 2022 by
victorlin
2 tasks
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