Merge pull request #911 from nextstrain/fix-mangled-input-files

fix: mixed up input-prc and input-virus-properties
nextstrain · Jun 29, 2022 · e9df843 · e9df843 · vercel · Jun 29, 2022
2 parents cff9f9f + dbb0ca9
commit e9df843
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,3 +1,9 @@
+# CHANGELOG
+
+## NEXT
+
+- **Fix** [[#908](https://github.com/nextstrain/nextclade/issues/908): Files passed as `--input-virus-properties` were interpreted like passed to `--input-pcr-primers` and vice versa (report: @BCArg, fix: @CorneliusRoemer)
+
 ## Nextclade 2.0.0
 
 ### Rust

diff --git a/packages_rs/nextclade-cli/src/dataset/dataset_download.rs b/packages_rs/nextclade-cli/src/dataset/dataset_download.rs
@@ -157,8 +157,8 @@ pub fn dataset_individual_files_load(
       (_, Some(input_tree)),
       (_, Some(input_gene_map)),
       (_, Some(input_qc_config)),
-      (_, Some(input_virus_properties)),
       (_, Some(input_pcr_primers)),
+      (_, Some(input_virus_properties)),
     ] => {
       dataset_load_files(DatasetFilePaths {
         input_ref,