Merge pull request #729 from d4straub/pipesidle-container

Retrieve Sidle container from quay.io/nf-core instead of docker.io/d4straub
nf-core · Apr 2, 2024 · 4707d38 · 4707d38
2 parents b68e479 + b42e8f0
commit 4707d38
Show file tree

Hide file tree

Showing 14 changed files with 14 additions and 14 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -8,7 +8,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 ### `Added`
 
 - [#700](https://github.com/nf-core/ampliseq/pull/700) - Optional `--save_intermediates` to publish QIIME2 data objects (.qza) and visualisation objects (.qzv)
-- [#702](https://github.com/nf-core/ampliseq/pull/702),[#723](https://github.com/nf-core/ampliseq/pull/723),[#728](https://github.com/nf-core/ampliseq/pull/728) - Add multiple regions analysis (including 5R / SMURF / q2-sidle)
+- [#702](https://github.com/nf-core/ampliseq/pull/702),[#723](https://github.com/nf-core/ampliseq/pull/723),[#728](https://github.com/nf-core/ampliseq/pull/728),[#729](https://github.com/nf-core/ampliseq/pull/729) - Add multiple regions analysis (including 5R / SMURF / q2-sidle)
 
 ### `Changed`
 

diff --git a/modules/local/sidle_align.nf b/modules/local/sidle_align.nf
@@ -2,7 +2,7 @@ process SIDLE_ALIGN {
     tag "$meta.region"
     label 'process_medium'
 
-    container 'docker.io/d4straub/pipesidle:0.1.0-beta'
+    container 'nf-core/pipesidle:0.1.0-beta'
 
     input:
     tuple val(meta), path(kmers), path(seq)

diff --git a/modules/local/sidle_dbextract.nf b/modules/local/sidle_dbextract.nf
@@ -3,7 +3,7 @@ process SIDLE_DBEXTRACT {
     tag "$meta.region,$meta.region_length"
     label 'process_medium'
 
-    container 'docker.io/d4straub/pipesidle:0.1.0-beta'
+    container 'nf-core/pipesidle:0.1.0-beta'
 
     input:
     tuple val(meta), path(table), path(seq), path(db_seq), path(db_tax)

diff --git a/modules/local/sidle_dbfilt.nf b/modules/local/sidle_dbfilt.nf
@@ -1,7 +1,7 @@
 process SIDLE_DBFILT {
     label 'process_low'
 
-    container 'docker.io/d4straub/pipesidle:0.1.0-beta'
+    container 'nf-core/pipesidle:0.1.0-beta'
 
     input:
     path(seq)

diff --git a/modules/local/sidle_dbrecon.nf b/modules/local/sidle_dbrecon.nf
@@ -1,7 +1,7 @@
 process SIDLE_DBRECON {
     label 'process_medium'
 
-    container 'docker.io/d4straub/pipesidle:0.1.0-beta'
+    container 'nf-core/pipesidle:0.1.0-beta'
 
     input:
     val(metaid)

diff --git a/modules/local/sidle_filttax.nf b/modules/local/sidle_filttax.nf
@@ -2,7 +2,7 @@
 process SIDLE_FILTTAX {
     label 'process_single'
 
-    container 'docker.io/d4straub/pipesidle:0.1.0-beta'
+    container 'nf-core/pipesidle:0.1.0-beta'
 
     input:
     path(table_tofilter)

diff --git a/modules/local/sidle_in.nf b/modules/local/sidle_in.nf
@@ -2,7 +2,7 @@ process SIDLE_IN {
     tag "$meta.region"
     label 'process_single'
 
-    container 'docker.io/d4straub/pipesidle:0.1.0-beta'
+    container 'nf-core/pipesidle:0.1.0-beta'
 
     input:
     tuple val(meta), path(table), path(seq)

diff --git a/modules/local/sidle_indb.nf b/modules/local/sidle_indb.nf
@@ -1,7 +1,7 @@
 process SIDLE_INDB {
     label 'process_single'
 
-    container 'docker.io/d4straub/pipesidle:0.1.0-beta'
+    container 'nf-core/pipesidle:0.1.0-beta'
 
     input:
     path(seq)

diff --git a/modules/local/sidle_indbaligned.nf b/modules/local/sidle_indbaligned.nf
@@ -1,7 +1,7 @@
 process SIDLE_INDBALIGNED {
     label 'process_single'
 
-    container 'docker.io/d4straub/pipesidle:0.1.0-beta'
+    container 'nf-core/pipesidle:0.1.0-beta'
 
     input:
     path(seq)

diff --git a/modules/local/sidle_seqrecon.nf b/modules/local/sidle_seqrecon.nf
@@ -2,7 +2,7 @@ process SIDLE_SEQRECON {
     label 'process_medium'
     label 'single_cpu'
 
-    container 'docker.io/d4straub/pipesidle:0.1.0-beta'
+    container 'nf-core/pipesidle:0.1.0-beta'
 
     input:
     path(reconstruction_map)

diff --git a/modules/local/sidle_tablerecon.nf b/modules/local/sidle_tablerecon.nf
@@ -1,7 +1,7 @@
 process SIDLE_TABLERECON {
     label 'process_medium'
 
-    container 'docker.io/d4straub/pipesidle:0.1.0-beta'
+    container 'nf-core/pipesidle:0.1.0-beta'
 
     input:
     val(metaid)

diff --git a/modules/local/sidle_taxrecon.nf b/modules/local/sidle_taxrecon.nf
@@ -1,7 +1,7 @@
 process SIDLE_TAXRECON {
     label 'process_single'
 
-    container 'docker.io/d4straub/pipesidle:0.1.0-beta'
+    container 'nf-core/pipesidle:0.1.0-beta'
 
     input:
     path(reconstruction_map)

diff --git a/modules/local/sidle_treerecon.nf b/modules/local/sidle_treerecon.nf
@@ -1,7 +1,7 @@
 process SIDLE_TREERECON {
     label 'process_medium'
 
-    container 'docker.io/d4straub/pipesidle:0.1.0-beta'
+    container 'nf-core/pipesidle:0.1.0-beta'
 
     input:
     path(reconstruction_fragments)

diff --git a/modules/local/sidle_trim.nf b/modules/local/sidle_trim.nf
@@ -2,7 +2,7 @@ process SIDLE_TRIM {
     tag "$meta.region,$meta.region_length"
     label 'process_single'
 
-    container 'docker.io/d4straub/pipesidle:0.1.0-beta'
+    container 'nf-core/pipesidle:0.1.0-beta'
 
     input:
     tuple val(meta), path(table), path(seq)