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Bioconda #10

Merged
merged 14 commits into from
May 30, 2018
Merged

Bioconda #10

merged 14 commits into from
May 30, 2018

Commits on May 25, 2018

  1. WIP: Bioconda environment file.

    @ewels @tiagochst
    ewels authored and tiagochst committed May 25, 2018
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  2. Updated Environment YAML - that should do the trick ;-)

    @tiagochst
    Alexander Peltzer authored and tiagochst committed May 25, 2018
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  3. Added r-spp to environment.yaml file

    @tiagochst
    Alexander Peltzer authored and tiagochst committed May 25, 2018
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  4. Cleaned package names in docker file

    @tiagochst
    Alexander Peltzer authored and tiagochst committed May 25, 2018
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  5. DeepTools requires pysam >=0.14.1 which requires samtools 1.7

    @tiagochst
    Alexander Peltzer authored and tiagochst committed May 25, 2018
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  6. INstalls just fine :-)

    @tiagochst
    Alexander Peltzer authored and tiagochst committed May 25, 2018
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  7. Doublechecked tool names and corrected some

    @tiagochst
    Alexander Peltzer authored and tiagochst committed May 25, 2018
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Commits on May 27, 2018

  1. phantompeakqualtools fixed, installing ngsplot genomes, fixing deepTools

    @tiagochst
    tiagochst committed May 27, 2018
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  2. phantompeakqualtools fixed, installing ngsplot genomes, fixing deepTools

    @tiagochst
    tiagochst committed May 27, 2018
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  3. fix identing

    @tiagochst
    tiagochst committed May 27, 2018
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Commits on May 28, 2018

  1. fixing arguemnt for bamCoverage

    @tiagochst
    tiagochst committed May 28, 2018
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  2. Merge branch 'bioconda' into bioconda

    @tiagochst
    tiagochst committed May 28, 2018
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Commits on May 29, 2018

  1. Adding doparallel to docker for improvement in bin/post_peak_calling_… 

    …processing.r
    @tiagochst
    tiagochst committed May 29, 2018
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Commits on May 30, 2018

  1. Revert docker file

    @tiagochst
    tiagochst committed May 30, 2018
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