Merge pull request #50 from bj-w/patch-1

Update DEA.R
nf-core · Aug 16, 2022 · cb41d06 · cb41d06
2 parents 5e17f6c + c0bfbd6
commit cb41d06
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/bin/DEA.R b/bin/DEA.R
@@ -321,7 +321,7 @@ DESeq2 <- function(inputdata, data_type){
         design = inputdata$design)
         tmp <- DESeq(tmp, quiet=TRUE)
 
-        sizefactors <- sizeFactors(tmp)
+        sizefactors <- estimateSizeFactorsForMatrix(counts(tmp))
         rm(tmp)
 
         dds <- DESeqDataSetFromMatrix(