fix: update and rearrange munin configuration file and docs #65
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maxulysse
commented
Aug 7, 2019
maxulysse
commented
- Improve description
- Add maxForks=48 in process
- Update max_memory to 754.GB
- Update max_cpus to 48
- Fix path to iGenomes
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I closed #52, because, I totally forgot it was there, so I deleted my fork before I noticed I wanted to do some changes on this PR... |
docs/munin.md
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| To use, run the pipeline with `-profile munin`. This will download and launch the [`munin.config`](../conf/munin.config) which has been pre-configured with a setup suitable for the MUNIN cluster. Using this profile, a docker image containing all of the required software will be downloaded, and converted to a Singularity image before execution of the pipeline. | ||
| To use, run the pipeline with `-profile munin`. | ||
| This will download and launch the [`munin.config`](../conf/munin.config) which has been pre-configured with a setup suitable for the MUNIN cluster. | ||
| Using this profile, a docker image containing all of the required software will be downloaded, and converted to a Singularity image before execution of the pipeline. |
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You can run with either docker or singularity with this profile? May need to be clarified here.
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Yes, we can, but good point, I'll clarify that
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Made some clarification
Co-Authored-By: Harshil Patel <drpatelh@users.noreply.github.com>
Co-Authored-By: Harshil Patel <drpatelh@users.noreply.github.com>
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Wow, are we sure we want to set the max memory that high? Same for CPU, the linux itself needs something to run on :D |
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Yes, VEP is very memory hungry... |
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I also removed autoMounts which was definitively failing when I tried |
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Well at least reserve 2GB and 2 CPU just for the linux. I mean if you force it to much the server will crash or your VEP will throw segfault. |
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That does sound sensible :-D |
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Ahhh...so nice to see the tests passing again 😅 |
