Fix - Failed to invoke workflow.onComplete event handler

[chris-cheshire]

Description of the bug

Failed to invoke workflow.onComplete event handler

Command used and terminal output

No response

Relevant files

No response

System information

No response

[ShannonTown]

Hi, I still encounter this issue, after running
nextflow self-update

How do I update the cutandrun pipeline? It's not very clear here at step 3

The command I used is
nextflow run nf-core/cutandrun --input samplesheet.csv --outdir ./nf-core --genome dm6 -profile docker --skip_trimming -bg

Thank you!!

[chris-cheshire]

please read the nextflow documentation on updating pipelines, its quite clear. You are updating nextflow itself with that command. Run nextflow pull nf-core\cutandrun

[chris-cheshire]

you also need to run with -r dev as this is an unreleased version of the pipeline that has this fixed

[ShannonTown]

Got it. Thank you very much!

…

On Tue, Aug 23, 2022 at 06:39 Chris Cheshire ***@***.***> wrote: you also need to run with -r dev as this is an unreleased version of the pipeline that has this fixed — Reply to this email directly, view it on GitHub <#137 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AHH5XFKWTCGFL452I4GMWOTV2SS75ANCNFSM5ZL6YCHQ> . You are receiving this because you commented.Message ID: ***@***.***>