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Suggestion to implement "greenlist normalization"
enhancement
Improvement for existing functionality
#257
opened Sep 5, 2024 by
GeroKn
Is the default binsize really 1 when using Something isn't working
CPM
normalization?
bug
#256
opened Aug 31, 2024 by
nvictus
Process Something isn't working
NFCORE_CUTANDRUN:CUTANDRUN:MULTIQC
input file name collision
bug
#255
opened Aug 30, 2024 by
AprilJack
NFCORE_CUTANDRUN:CUTANDRUN:DEEPTOOLS_PLOTHEATMAP_PEAKS terminated with an error exit status (137)
pipeline_error
#254
opened Aug 20, 2024 by
monovich
ERROR ~ ERROR: Please check input samplesheet -> Read 1 FastQ file does not exist!
pipeline_error
#253
opened Aug 7, 2024 by
avanthikav
The AWS Access Key Id you provided does not exist in our records
pipeline_error
#250
opened Aug 6, 2024 by
cutleraging
PLOT_CONSENSUS_PEAKS worflow does not produce the upset plot
bug
Something isn't working
WIP
Work in progress
#248
opened Jul 24, 2024 by
Alessandro201
Provide relative paths to resources in IGV session file
bug
Something isn't working
feature-request
Request for a new pipeline feature
WIP
Work in progress
#247
opened Jul 18, 2024 by
siddharthab
How to set sample sheet without IgG control?
question
Further information is requested
#244
opened May 21, 2024 by
yxralba088
picard mark duplicates error command exit status 140
pipeline_error
#240
opened Apr 30, 2024 by
natpeckett
Generate a heatmap for consensus peaks
enhancement
Improvement for existing functionality
#239
opened Apr 30, 2024 by
ftabaro
Error with kernel swap limit/ cgroup while executing NFCORE_CUTANDRUN:CUTANDRUN:SAMTOOLS_CUSTOMVIEW
question
Further information is requested
WIP
Work in progress
#236
opened Apr 3, 2024 by
Prathyusha-konda
Update MACS to v3
enhancement
Improvement for existing functionality
WIP
Work in progress
#228
opened Jan 25, 2024 by
alexpmagalhaes
Align spike-in with less stringent params based on the left over from primary alignment
enhancement
Improvement for existing functionality
WIP
Work in progress
#227
opened Jan 18, 2024 by
chris-cheshire
Improve error handling after error in PREPARE_GENOME:BLACKLIST_BEDTOOLS_INTERSECT
enhancement
Improvement for existing functionality
WIP
Work in progress
#219
opened Nov 29, 2023 by
H-Bell
Version 3.2 does not run, fails in frag histogram step
bug
Something isn't working
WIP
Work in progress
#211
opened Sep 25, 2023 by
skilpinen
Samtools Customview Fails with Unavoidable Segmentation Faults
bug
Something isn't working
enhancement
Improvement for existing functionality
WIP
Work in progress
#199
opened May 31, 2023 by
ieres-amgen
Upgrade to SEACR 1.4
enhancement
Improvement for existing functionality
#64
opened Nov 10, 2021 by
chris-cheshire
ProTip!
Exclude everything labeled
bug
with -label:bug.