[2.3.0] - Aalen - 2020-10-21

jfy133 released this 11 Jan 12:02

· 802 commits to master since this release

`Added`

Major #640 - Added a pre-metagenomic screening filtering of low-sequence complexity reads with bbduk
Major #583 - Added mapDamage2 rescaling of BAM files to remove damage
Updated usage (merging files) and workflow images reflecting new functionality.

`Fixed`

Removed leftover old DockerHub push CI commands.
#627 - Added de Barros Damgaard citation to README
#630 - Better handling of Qualimap memory requirements and error strategy.
Fixed some incomplete schema options to ensure users supply valid input values
Major #638 Fixed inverted circularfilter filtering (previously filtering would happen by default, not when requested by user as originally recorded in documentation)
DeDup: Fixed Null Pointer Bug in DeDup by updating to 0.12.8 version
#650 - Increased memory given to FastQC for larger files by making it multithreaded

`Dependencies`

Update: DeDup v0.12.7 to v0.12.8

Assets 2