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Merge pull request #157 from drpatelh/fixes
Add public_aws_ecr.config and use in CI tests
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Original file line number | Diff line number | Diff line change |
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@@ -0,0 +1,24 @@ | ||
/* | ||
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | ||
AWS ECR Config | ||
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | ||
Config to set public AWS ECR images wherever possible | ||
This improves speed when running on AWS infrastructure. | ||
Use this as an example template when using your own private registry. | ||
---------------------------------------------------------------------------------------- | ||
*/ | ||
|
||
docker.registry = 'public.ecr.aws' | ||
podman.registry = 'public.ecr.aws' | ||
|
||
process { | ||
withName: '.*:SRATOOLS_FASTERQDUMP' { | ||
container = 'quay.io/biocontainers/mulled-v2-5f89fe0cd045cb1d615630b9261a1d17943a9b6a:6a9ff0e76ec016c3d0d27e0c0d362339f2d787e6-0' | ||
} | ||
withName: '.*:SRA_MERGE_SAMPLESHEET' { | ||
container = 'quay.io/nf-core/ubuntu:20.04' | ||
} | ||
withName: '.*:SYNAPSE_MERGE_SAMPLESHEET' { | ||
container = 'quay.io/nf-core/ubuntu:20.04' | ||
} | ||
} |
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