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Add public_aws_ecr.config and use in CI tests #157

Merged
merged 9 commits into from
May 15, 2023
Merged

Add public_aws_ecr.config and use in CI tests #157

merged 9 commits into from
May 15, 2023

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drpatelh
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See fo reference: nf-core/smrnaseq#246

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github-actions bot commented May 13, 2023 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit f510057

+| ✅ 149 tests passed       |+
#| ❔   3 tests were ignored |#
!| ❗   6 tests had warnings |!

❗ Test warnings:

  • files_exist - File not found: conf/igenomes.config
  • files_exist - File not found: .github/workflows/awstest.yml
  • files_exist - File not found: .github/workflows/awsfulltest.yml
  • files_exist - File not found: lib/WorkflowFetchngs.groovy
  • nextflow_config - Config manifest.version should end in dev: '1.10.0'
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your prefered methods description, e.g. add publication citation for this pipeline

❔ Tests ignored:

  • files_unchanged - File ignored due to lint config: assets/sendmail_template.txt
  • files_unchanged - File ignored due to lint config: lib/NfcoreTemplate.groovy
  • actions_awstest - 'awstest.yml' workflow not found: /home/runner/work/fetchngs/fetchngs/.github/workflows/awstest.yml

✅ Tests passed:

Run details

  • nf-core/tools version 2.8
  • Run at 2023-05-14 20:09:52

@drpatelh drpatelh requested a review from adamrtalbot May 13, 2023 20:11
@drpatelh
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Need to test this actually works. Matbe we can do it via the workflow dispatch from dev when it is merged 🤔 Can't remeber whether the Actions needs to be merged to master or not. Anyhow, hopefully the changes in the PR look good.

@drpatelh drpatelh mentioned this pull request May 14, 2023
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@drpatelh
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Tests failing because we need the PR below adding GEO support to be merged in first:
#155

Will merge this in for now because tests will need to be re-run on those PRs again anyway.

@drpatelh drpatelh merged commit 719dde4 into nf-core:dev May 15, 2023
4 of 10 checks passed
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@adamrtalbot adamrtalbot adamrtalbot approved these changes

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@drpatelh @adamrtalbot