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Hotfix: docker.registry outside of docker profile #279

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merged 2 commits into from
May 25, 2023
Merged

Hotfix: docker.registry outside of docker profile #279

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e9be867
Hotfix: docker.registry outside of docker profile
adamrtalbot May 25, 2023
61df214
Remove other occurences of docker.registry
drpatelh May 25, 2023
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8 changes: 6 additions & 2 deletions nextflow.config
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Original file line number Diff line number Diff line change
Expand Up @@ -259,7 +259,6 @@ profiles {
docker {
conda.enabled = false
docker.enabled = true
docker.registry = 'quay.io'
docker.userEmulation = true
conda.enabled = false
singularity.enabled = false
Expand All @@ -283,7 +282,6 @@ profiles {
}
podman {
podman.enabled = true
podman.registry = 'quay.io'
conda.enabled = false
docker.enabled = false
singularity.enabled = false
Expand Down Expand Up @@ -350,6 +348,12 @@ env {
// Capture exit codes from upstream processes when piping
process.shell = ['/bin/bash', '-euo', 'pipefail']

// Set default registry for Docker and Podman independent of -profile
// Will not be used unless Docker / Podman are enabled
// Set to your registry if you have a mirror of containers
docker.registry = 'quay.io'
podman.registry = 'quay.io'

def trace_timestamp = new java.util.Date().format( 'yyyy-MM-dd_HH-mm-ss')
timeline {
enabled = true
Expand Down