Crema Catalana

Pipeline Updates

• 🔄 Updated template to nf-core/tools v2.9
• 🔄 Updated template to nf-core/tools v2.10
• 🔧 Updated nf-core modules for FastQC, samtools sort, samtools flagstat @ewels
  • ❌ Removes problematic -m memory assignment for samtools sort #81
• 🧾 Use fromSamplesheet from nf-validation #341 @emiller88
• 🚀 Update Maintainers and add CODEOWNERS #345 @emiller88
• ⚙️ Update schema to utilize exists and add more patterns #342 @emiller88
• 📁 Support pipeline-specific configs #343 @maxulysse

Bug fixes & refactoring

• 🛠️ Added publishing of coverage (*cov.gz) files for NOMe-seq filtered reads for coverage2cytosine @FelixKrueger
• 🛠️ Wrong display values for "zymo" and "em_seq" presets on help page #335 @wassimsalam01
• 📚 Use new Citation tools functions #336 @emiller88

Full Changelog: 2.4.0...2.5.0