multi-tool instructions #376
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Add instructions on how to build a bespoke multi-tool Docker container and Singularity image
drpatelh
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Mar 24, 2021
drpatelh
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drpatelh
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drpatelh
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README.md
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| @@ -395,6 +395,32 @@ using a combination of `bwa` and `samtools` to output a BAM file instead of a SA | |||
| > NB: Build information for all tools within a multi-tool container can be obtained in the `/usr/local/conda-meta/history` file within the container. | |||
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| - It is also possible for a new multi-tool container to be built and added to BioContainers by submitting a pull request on their [`multi-package-containers`](https://github.com/BioContainers/multi-package-containers) repository. | |||
| - Fork the [multi-package-containers repository](https://github.com/BioContainers/multi-package-containers) | |||
| - Make a change to the `hash.tsv` file in the `combinations` directory see [here](https://github.com/aunderwo/multi-package-containers/blob/master/combinations/hash.tsv#L124) for an example where I added `pysam=0.16.0.1,biopython=1.78` | |||
| - Commit the code and then make a pull request to the original repo for [example](https://github.com/BioContainers/multi-package-containers/pull/1661) | |||
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| - Commit the code and then make a pull request to the original repo for [example](https://github.com/BioContainers/multi-package-containers/pull/1661) | |
| - Commit the code and then make a pull request to the original repo e.g. [here](https://github.com/BioContainers/multi-package-containers/pull/1661) |
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Add instructions on how to build a bespoke multi-tool Docker container and Singularity image
PR checklist
<SOFTWARE>.version.txtfile.labelPROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wdPROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wdPROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd