Allow normalization adjustment #42

apeltzer · 2023-06-28T11:55:01Z

Added possibility to adjust normalization accordingly (e.g. specifying the method GLM).

github-actions · 2023-06-28T11:56:22Z

`nf-core lint` overall result: Passed ✅

Posted for pipeline commit 3f9efe8

+| ✅ 160 tests passed       |+

✅ Tests passed:

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schema_lint - Schema lint passed
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modules_structure - modules directory structure is correct 'modules/nf-core/TOOL/SUBTOOL'

Run details

nf-core/tools version 2.8
Run at 2023-06-28 11:57:34

christopher-mohr

LGTM!

christopher-mohr · 2023-06-28T12:14:00Z

CHANGELOG.md

+
+### `Added`
+
+- Allow users to specify normalizations: `GEO` (default) or `GLM`


Maybe better "normalization method" ?

CHANGELOG.md

apeltzer added 2 commits June 28, 2023 11:53

Allow adjusting normalization parameters

4f09c80

Add usage

c485a5f

apeltzer requested a review from christopher-mohr June 28, 2023 11:55

apeltzer marked this pull request as ready for review June 28, 2023 11:55

Prettier

3f9efe8

christopher-mohr approved these changes Jun 28, 2023

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apeltzer commented Jun 28, 2023

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Update CHANGELOG.md

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apeltzer merged commit 9f4a05d into dev Jun 28, 2023
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apeltzer deleted the allow-normalization-adjustment branch June 28, 2023 13:03

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Allow normalization adjustment #42

Allow normalization adjustment #42

apeltzer commented Jun 28, 2023

github-actions bot commented Jun 28, 2023 •

edited

✅ Tests passed:

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christopher-mohr left a comment

christopher-mohr Jun 28, 2023


		### `Added`

		- Allow users to specify normalizations: `GEO` (default) or `GLM`

Allow normalization adjustment #42

Allow normalization adjustment #42

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apeltzer commented Jun 28, 2023

github-actions bot commented Jun 28, 2023 • edited

nf-core lint overall result: Passed ✅

✅ Tests passed:

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github-actions bot commented Jun 28, 2023 •

edited

`nf-core lint` overall result: Passed ✅