fix: Remove pull_docker_container from PINTS

nf-core · Mar 7, 2024 · 14cba30 · 14cba30
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -10,6 +10,10 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - [5bcfe4f](https://github.com/nf-core/nascent/commit/5bcfe4ff1729b89e9e5741c473d32168b836a57f) - Update pipeline template to [nf-core/tools 2.13](https://github.com/nf-core/tools/releases/tag/2.13)
 - [a3bc907](https://github.com/nf-core/nascent/commit/a3bc907e9afd9dd2a9572798fa16fbc781c3dcb0) - Update pipeline template to [nf-core/tools 2.13.1](https://github.com/nf-core/tools/releases/tag/2.13.1)
 
+### Changed
+
+- [[#137](https://github.com/nf-core/nascent/pull/137)] - Use singularity containers for PINTS
+
 ## v2.2.0 - 2024-03-05
 
 ### Added

diff --git a/conf/modules.config b/conf/modules.config
@@ -153,9 +153,6 @@ process {
     withName: PINTS_CALLER {
         // FIXME bowtie2 fails for some reason
         ext.when = { params.aligner != "bowtie2" }
-        // FIXME The singularity image doesn't exist on biocontainers yet
-        // https://github.com/hyulab/PINTS/issues/3
-        ext.singularity_pull_docker_container = true
     }
 
     withName: BEDTOOLS_SORT {