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Support both NT and TSS assays #39

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edmundmiller opened this issue Mar 24, 2022 · 3 comments · Fixed by #58
Closed

Support both NT and TSS assays #39

edmundmiller opened this issue Mar 24, 2022 · 3 comments · Fixed by #58
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v2.0.0

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NT

  • homer
  • grohmm

TSS

  • PINTS
@edmundmiller edmundmiller self-assigned this Mar 24, 2022
This was referenced Mar 24, 2022
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@edmundmiller edmundmiller added this to the v2.0.0 milestone Mar 24, 2022
edmundmiller added a commit that referenced this issue Apr 1, 2022
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chore(dreg): Remove DREG
7d6e5b0 
In favor of identification methods with requirements more users will be
able to meet: #39

Support for web portal submission eventually: #31
edmundmiller added a commit that referenced this issue Apr 3, 2022
@edmundmiller
chore(dreg): Remove DREG
b16af59 
In favor of identification methods with requirements more users will be
able to meet: #39

Support for web portal submission eventually: #31
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bioconda/bioconda-recipes#36696

@edmundmiller edmundmiller mentioned this issue Sep 12, 2022
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hyulab/PINTS#12
and
hyulab/PINTS#11

@edmundmiller edmundmiller changed the title Split identification into NT and TSS assays Support both NT and TSS assays Oct 4, 2022
@liyao001 liyao001 mentioned this issue Oct 8, 2022
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liyao001 commented Oct 21, 2022 •
edited

Issue hyulab/PINTS#12 should be solved in PINTS 1.1.8, and the bioconda channel now has this version available. Please let me know if this version works and feel free to reopen hyulab/PINTS#12 if the problem is still there. One thing I want to mention is that when sequencing depth is low, PINTS may only generate certain types of outputs (bidirectional+divergerent, divergent-only, or unidirectional-only).

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