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update dev from bigbio #12

Merged
merged 16 commits into from Mar 28, 2022
Merged

update dev from bigbio #12

merged 16 commits into from Mar 28, 2022

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jpfeuffer
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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
    • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
    • If necessary, also make a PR on the nf-core/quantms branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

daichengxin and others added 16 commits March 25, 2022 13:04
@daichengxin
Merge pull request #1 from bigbio/dev
bd2adf2 
pull
@daichengxin
Major fix
e83ef1a
@daichengxin
fixed
58bc938
@daichengxin @jpfeuffer
Update modules/local/openms/filemerge/meta.yml
182da7d 
Co-authored-by: Julianus Pfeuffer <pfeuffer@informatik.uni-tuebingen.de>
@daichengxin @jpfeuffer
Update modules/local/openms/filemerge/meta.yml
cff9cba 
Co-authored-by: Julianus Pfeuffer <pfeuffer@informatik.uni-tuebingen.de>
@daichengxin @jpfeuffer
Update modules/local/openms/thirdparty/luciphoradapter/main.nf
8f8b859 
Co-authored-by: Julianus Pfeuffer <pfeuffer@informatik.uni-tuebingen.de>
@daichengxin @jpfeuffer
Update modules/local/openms/thirdparty/luciphoradapter/meta.yml
f8dceb8 
Co-authored-by: Julianus Pfeuffer <pfeuffer@informatik.uni-tuebingen.de>
@daichengxin @jpfeuffer
Update nextflow_schema.json
a72b149 
Co-authored-by: Julianus Pfeuffer <pfeuffer@informatik.uni-tuebingen.de>
@daichengxin @jpfeuffer
Update modules/local/openms/thirdparty/luciphoradapter/meta.yml
aa64204 
Co-authored-by: Julianus Pfeuffer <pfeuffer@informatik.uni-tuebingen.de>
@daichengxin
fixed
b7f27cd
@daichengxin
fixed
c3770e2
@daichengxin
update testdata url
57bd941
@daichengxin
update testdata
d2e8545
@daichengxin
fixed diann bug
1e4784e
@daichengxin
fix lint
b7603b9
@jpfeuffer
Merge pull request #145 from daichengxin/dev
eb8ee5d 
Major fix
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github-actions bot commented Mar 28, 2022 •
edited

nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit eb8ee5d

+| ✅ 145 tests passed       |+
#| ❔   1 tests were ignored |#
!| ❗   1 tests had warnings |!

❗ Test warnings:

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 2.3.2
  • Run at 2022-03-28 16:13:16

@jpfeuffer jpfeuffer merged commit ac6870b into nf-core:dev Mar 28, 2022
jpfeuffer pushed a commit that referenced this pull request Apr 21, 2022
@daichengxin
Merge pull request #12 from bigbio/dev
03bf7c1 
dia file path changed
daichengxin referenced this pull request in daichengxin/quantms Nov 5, 2023
@daichengxin
Merge pull request #12 from bigbio/readthedocs
e6ec4f7 
Readthedocs
ypriverol pushed a commit to ypriverol/quantms that referenced this pull request Jan 23, 2024
@daichengxin
Merge pull request nf-core#12 from TalusBio/bb_feature/skip_prelim
3c80318 
Bb feature/skip prelim
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@jpfeuffer @daichengxin