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Version 1.2 [PLEASE DO NOT MERGE YET] #120

Merged
merged 260 commits into from
Nov 2, 2023
Merged

Version 1.2 [PLEASE DO NOT MERGE YET] #120

merged 260 commits into from
Nov 2, 2023
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Commits on Aug 4, 2023

  1. changed comment character

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  2. added tuple of meta to tdf2mzml outs

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  3. added debug prints to diann conversion

    @jspaezp
    jspaezp committed Aug 4, 2023
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  4. added renaming of dotd files after extraction

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    jspaezp committed Aug 4, 2023
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  5. yet more debug printing info

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  6. added not to branching

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Commits on Aug 6, 2023

  1. refactoring of diann convert

    @jspaezp
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  2. fixed bug where mzml AND raw files were passed

    @jspaezp
    jspaezp committed Aug 6, 2023
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  3. added speclib to schema

    @jspaezp
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  4. returned report in abstracted diannconvert

    @jspaezp
    jspaezp committed Aug 6, 2023
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  5. refactor and speedup of diann summary

    @jspaezp
    jspaezp committed Aug 6, 2023
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  6. added debug info to versions

    @jspaezp
    jspaezp committed Aug 6, 2023
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  7. moved tar version in the workflow from tracking to logging

    @jspaezp
    jspaezp committed Aug 6, 2023
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  8. fixed dumb error

    @jspaezp
    jspaezp committed Aug 6, 2023
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  9. experimental change of the experimental design to make multiqc pass

    @jspaezp
    jspaezp committed Aug 6, 2023
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  10. changed debug listing of contents in multiqc from tree to ls

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Commits on Aug 7, 2023

  1. stuff

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Commits on Aug 9, 2023

  1. major speedup

    @jspaezp
    jspaezp committed Aug 9, 2023
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  2. speed and logging improvement

    @jspaezp
    jspaezp committed Aug 9, 2023
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  3. improved error messaging when calculating coverages

    @jspaezp
    jspaezp committed Aug 9, 2023
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Commits on Aug 10, 2023

  1. further optimization

    @jspaezp
    jspaezp committed Aug 10, 2023
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Commits on Aug 11, 2023

  1. changed paths to vals

    @jspaezp
    jspaezp committed Aug 11, 2023
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  2. typo fix

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    jspaezp committed Aug 11, 2023
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Commits on Aug 12, 2023

  1. even more optimization in diann conversion

    @jspaezp
    jspaezp committed Aug 12, 2023
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  2. added a bit of debug logging

    @jspaezp
    jspaezp committed Aug 12, 2023
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  3. change to path in the empirical lib step and yet even more optimization

    @jspaezp
    jspaezp committed Aug 12, 2023
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  4. Further speedup of diann conversion, prevent staging of un-needed fil… 

    …es and fixed mass calc

Experimental/feature/bruker data
    @jspaezp
    jspaezp committed Aug 12, 2023
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Commits on Aug 17, 2023

  1. Experimental/bruker report (#2) 

    * added report info
* split decompression step
* Included ms1 TIC/BPC
* added new data to report channel
* added convert_dotd to the schema
* fixed bug where passed mass accuracies were bypassed
* code formatting
    @jspaezp
    jspaezp committed Aug 17, 2023
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  2. Merge branch 'dev' into feature/bruker_data

    @jspaezp
    jspaezp committed Aug 17, 2023
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  3. incorporated code review notes

    @jspaezp
    jspaezp committed Aug 17, 2023
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  4. minor fix on nf-core linting

    @jspaezp
    jspaezp committed Aug 17, 2023
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Commits on Aug 23, 2023

  1. [FEATURE] Add sage as a means for identification in DDA

    @jpfeuffer
    jpfeuffer committed Aug 23, 2023
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Commits on Aug 27, 2023

  1. Some more fixes for sage addition

    @jpfeuffer
    jpfeuffer committed Aug 27, 2023
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Commits on Aug 31, 2023

  1. [FEATURE] finish sage integration

    @jpfeuffer
    jpfeuffer committed Aug 31, 2023
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  2. fix psmrescoring, no auto-index anymore

    @jpfeuffer
    jpfeuffer committed Aug 31, 2023
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Commits on Sep 1, 2023

  1. whitespace related linting

    @jspaezp
    jspaezp committed Sep 1, 2023
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  2. prettier autofix of quotes

    @jspaezp
    jspaezp committed Sep 1, 2023
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  3. Merge branch 'dev' of https://github.com/nf-core/quantms into dev

    @ypriverol
    ypriverol committed Sep 1, 2023
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  4. Merge branch 'nf-core-template-merge-2.9' of https://github.com/nf-co… 

    …re/quantms into dev

# Conflicts:
#	.github/workflows/awsfulltest.yml
#	.github/workflows/awstest.yml
#	CHANGELOG.md
#	CITATIONS.md
#	README.md
#	bin/check_samplesheet.py
#	conf/base.config
#	conf/igenomes.config
#	docs/usage.md
#	lib/WorkflowMain.groovy
#	lib/WorkflowQuantms.groovy
#	modules/local/samplesheet_check.nf
#	nextflow.config
#	nextflow_schema.json
#	workflows/quantms.nf
    @ypriverol
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  5. Merge branch 'TEMPLATE' of https://github.com/nf-core/quantms into me… 

    …rging-template-update
    @jpfeuffer
    jpfeuffer committed Sep 1, 2023
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  6. lint and config fixes

    @jpfeuffer
    jpfeuffer committed Sep 1, 2023
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  7. fix revert of manifest

    @jpfeuffer
    jpfeuffer committed Sep 1, 2023
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  8. fix lint errors

    @jpfeuffer
    jpfeuffer committed Sep 1, 2023
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  9. more lint

    @jpfeuffer
    jpfeuffer committed Sep 1, 2023
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  10. add back profiles

    @jpfeuffer
    jpfeuffer committed Sep 1, 2023
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  11. fix input file regexes

    @jpfeuffer
    jpfeuffer committed Sep 1, 2023
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  12. fix some lint warnings

    @jpfeuffer
    jpfeuffer committed Sep 1, 2023
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  13. Merge pull request #108 from jpfeuffer/merging-template-update 

    Merging template update 2.9
    @ypriverol
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  14. Merge pull request #109 from jpfeuffer/merging-template-update 

    fix some lint warnings
    @jpfeuffer
    jpfeuffer committed Sep 1, 2023
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  15. Use path

    @jpfeuffer
    jpfeuffer committed Sep 1, 2023
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  16. Merge branch 'dev' into feature/sage

    @jpfeuffer
    jpfeuffer committed Sep 1, 2023
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  17. always index

    @jpfeuffer
    jpfeuffer committed Sep 1, 2023
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  18. Merge branch 'feature/sage' of https://github.com/nf-core/quantms int… 

    …o feature/sage
    @jpfeuffer
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Commits on Sep 2, 2023

  1. added comet to config for multisearch with sage

    @ypriverol
    ypriverol committed Sep 2, 2023
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Commits on Sep 3, 2023

  1. Experimental/bruker agg metrics (#3) 

    * more report info
* bugfix on variable replacement
* bugfix, unavailable variable
* added debug info
    @jspaezp
    jspaezp committed Sep 3, 2023
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  2. Updating to upstream dev branch (#4)

    @jspaezp
    jspaezp committed Sep 3, 2023
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  3. updated example of cli run

    @jspaezp
    jspaezp committed Sep 3, 2023
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  4. Merge branch 'dev' into feature/bruker_data

    @jspaezp
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Commits on Sep 4, 2023

  1. use nightly for consensusid

    @jpfeuffer
    jpfeuffer committed Sep 4, 2023
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Commits on Sep 6, 2023

  1. Update main.nf 

    update sdrf-pipelines-0.0.23
    @ypriverol
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  2. Update main.nf

    @ypriverol
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  3. Update main.nf 

    Dynamic versions captured
    @ypriverol
    ypriverol committed Sep 6, 2023
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  4. Update main.nf

    @ypriverol
    ypriverol committed Sep 6, 2023
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  5. Update samplesheet_check.nf

    @ypriverol
    ypriverol committed Sep 6, 2023
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  6. Update preprocess_expdesign.nf

    @ypriverol
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  7. Merge pull request #111 from nf-core/sdrf-pipelines-0.0.23 

    Update main.nf
    @jpfeuffer
    jpfeuffer committed Sep 6, 2023
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  8. fix output order of sage process

    @jpfeuffer
    jpfeuffer committed Sep 6, 2023
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  9. lint

    @jpfeuffer
    jpfeuffer committed Sep 6, 2023
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  10. Merge pull request #105 from nf-core/feature/sage 

    [FEATURE] Add sage as a means for identification in DDA
    @ypriverol
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Commits on Sep 7, 2023

  1. Fixing bug bigbio#278 

    Fixing bug bigbio#278
    @ypriverol
    ypriverol committed Sep 7, 2023
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  2. fix errors with Sage

    @ypriverol
    ypriverol committed Sep 7, 2023
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  3. Update main.nf

    @ypriverol
    ypriverol committed Sep 7, 2023
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  4. Update main.nf

    @ypriverol
    ypriverol committed Sep 7, 2023
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  5. Merge pull request #279 from bigbio/sage-bug-fixing 

    Fixing multiple bugs of sage quantms
    @ypriverol
    ypriverol committed Sep 7, 2023
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Commits on Sep 10, 2023

  1. fixed linting on decompress dotd nf file

    @jspaezp
    jspaezp committed Sep 10, 2023
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  2. Merge branch 'feature/bruker_data' of github.com:TalusBio/quantms int… 

    …o feature/bruker_data
    @jspaezp
    jspaezp committed Sep 10, 2023
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  3. fixed inverted rows error (code review)

    @jspaezp
    jspaezp committed Sep 10, 2023
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  4. Merge branch 'dev' into feature/bruker_data

    @jspaezp
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  5. changed lookup key for the PRH best score

    @jspaezp
    jspaezp committed Sep 10, 2023
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  6. fixed error that arose from fixing merge conflicts

    @jspaezp
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Commits on Sep 15, 2023

  1. Merge branch 'dev' of https://github.com/bigbio/quantms into dev 

    # Conflicts:
#	.github/workflows/awsfulltest.yml
#	.github/workflows/awstest.yml
#	CITATIONS.md
#	README.md
#	bin/check_samplesheet.py
#	conf/base.config
#	lib/WorkflowMain.groovy
#	lib/WorkflowQuantms.groovy
#	modules/local/samplesheet_check.nf
#	nextflow.config
#	nextflow_schema.json
#	workflows/quantms.nf
    @ypriverol
    ypriverol committed Sep 15, 2023
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  2. update pmultiqc 0.0.20 -> 0.0.19

    @ypriverol
    ypriverol committed Sep 15, 2023
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  3. fix small typo

    @ypriverol
    ypriverol committed Sep 15, 2023
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  4. do not remove a plot for all proteins in msstats_tmt.R

    @ypriverol
    ypriverol committed Sep 15, 2023
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  5. updated pmultiqc version

    @jspaezp
    jspaezp committed Sep 15, 2023
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  6. improving ProfileTMT export plot

    @ypriverol
    ypriverol committed Sep 15, 2023
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  7. Merge pull request #281 from ypriverol/dev 

    Dev
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Commits on Sep 16, 2023

  1. included the QCPlot

    @ypriverol
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  2. Merge branch 'dev' of https://github.com/bigbio/quantms into dev

    @ypriverol
    ypriverol committed Sep 16, 2023
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  3. msstats change.

    @ypriverol
    ypriverol committed Sep 16, 2023
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Commits on Sep 18, 2023

  1. update sdrf-pipelines 0.0.24

    @ypriverol
    ypriverol committed Sep 18, 2023
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  2. Merge pull request #284 from ypriverol/dev 

    sdrf-pipelines version 0.0.24 and parameters for msstats tmt
    @ypriverol
    ypriverol committed Sep 18, 2023
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Commits on Sep 19, 2023

  1. Maintainance/finish integration with bigbio (#5) 

    * changed files to paths in final diann analysis
* updated decompression to support zip
* added exception when the decompressed file already matches the required pattern
    @jspaezp
    jspaezp committed Sep 19, 2023
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  2. Merge branch 'dev' into feature/bruker_data

    @jspaezp
    jspaezp committed Sep 19, 2023
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Commits on Sep 25, 2023

  1. update some process to openms dev

    @ypriverol
    ypriverol committed Sep 25, 2023
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  2. pmultiqc 0.0.20 -> 0.0.21

    @ypriverol
    ypriverol committed Sep 25, 2023
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  3. msstats and msstats versions increased

    @ypriverol
    ypriverol committed Sep 25, 2023
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  4. - disable read idxml in pmultiqc 

    - remove PTXQC from workflow
    @ypriverol
    ypriverol committed Sep 25, 2023
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  5. id_transfer_threshold included for MBR in proteomicsLFQ

    @ypriverol
    ypriverol committed Sep 25, 2023
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  6. transfer_ids instead of targeted_only

    @ypriverol
    ypriverol committed Sep 25, 2023
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  7. Merge pull request #289 from ypriverol/dev 

    update some process to openms dev
    @ypriverol
    ypriverol committed Sep 25, 2023
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  8. transfer_ids instead of targeted_only

    @ypriverol
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  9. Merge branch 'dev' of https://github.com/bigbio/quantms into dev

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  10. Merge pull request #291 from ypriverol/dev 

    Dev
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  11. Template update for nf-core/tools version 2.10

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  12. transfer_ids instead of targeted_only

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  13. Merge branch 'dev' of https://github.com/bigbio/quantms into dev

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  14. Merge pull request #292 from ypriverol/dev 

    id transfer threshold update
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Commits on Sep 27, 2023

  1. updating percolator

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  2. Merge branch 'dev' of https://github.com/bigbio/quantms into dev

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  3. updating percolator

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  4. Merge pull request #293 from ypriverol/dev 

    updating percolator for testing
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  5. update dev.config to work with dev containers

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  6. update dev.config to work with dev containers

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  7. Merge branch 'dev' of https://github.com/bigbio/quantms into dev

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  8. update dev.config to work with dev containers

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  9. Update dev.config

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  11. update dev.config

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  12. update dev.config

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Commits on Sep 28, 2023

  1. msgf+ path not found in dev container

    @ypriverol
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  2. padding spaces

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  9. update the find path for dev openms

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  10. update Luciphor to capture dev version.

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  11. Merge branch 'nf-core-template-merge-2.10' of https://github.com/nf-c… 

    …ore/quantms into dev

# Conflicts:
#	CITATIONS.md
#	README.md
#	docs/output.md
#	docs/usage.md
#	main.nf
#	modules.json
#	modules/nf-core/fastqc/main.nf
#	nextflow_schema.json
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  12. move default container server from docker -> quay.io

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  13. move default container server from docker -> quay.io

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  14. move default container server from docker -> quay.io

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  15. Merge pull request #294 from ypriverol/dev 

    updating nextflow.config
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  16. review suggestions

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  17. Update modules/local/dotd_to_mqc/main.nf 

    Co-authored-by: Yasset Perez-Riverol <ypriverol@gmail.com>
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  18. Update modules/local/decompress_dotd/main.nf 

    Co-authored-by: Yasset Perez-Riverol <ypriverol@gmail.com>
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  19. Merge branch 'dev' into feature/bruker_data

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Commits on Sep 29, 2023

  1. Merge pull request #275 from TalusBio/feature/bruker_data 

    Feature/bruker data
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  2. fix small bug in decompress

    @ypriverol
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  3. fix small bug in decompress

    @ypriverol
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  4. fix small bug in decompress

    @ypriverol
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  5. Merge pull request #295 from ypriverol/dev 

    First iteration of bug fixing in Bruker support
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Commits on Sep 30, 2023

  1. pmultiqc 0.21 -> 0.22

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  2. Merge pull request #297 from ypriverol/dev 

    pmultiqc 0.21 -> 0.22
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Commits on Oct 2, 2023

  1. Merge pull request #3 from bigbio/dev 

    dev
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Commits on Oct 5, 2023

  1. major refactoring of PLFQ to a probabilistic approach

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  2. major refactoring of PLFQ to a probabilistic approach

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  3. major refactoring of PLFQ to a probabilistic approach

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Commits on Oct 6, 2023

  1. major refactoring of PLFQ to a probabilistic approach

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Commits on Oct 9, 2023

  1. lfq_intensity_threshold added

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  2. lfq_intensity_threshold added

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  3. Update modules/local/openms/proteomicslfq/main.nf 

    Co-authored-by: Julianus Pfeuffer <julianus.pfeuffer@pfizer.com>
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Commits on Oct 11, 2023

  1. Update filters nextflow.config 

    based on comment bigbio#301 (comment) and the corresponding benchamrks I have updated the filters and parameters for LFQ
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Commits on Oct 12, 2023

  1. Merge pull request #300 from ypriverol/dev 

    major refactoring of PLFQ to a probabilistic approach
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Commits on Oct 13, 2023

  1. error fixed docker hub diann

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  2. Merge pull request #302 from ypriverol/dev 

    error fixed docker hub diann
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Commits on Oct 14, 2023

  1. changes in the CHANGELOG.md

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  2. change percolator

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  3. replace openms by thirdparty openms

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  1. replace openms by thirdparty openms also for containers

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  2. Merge pull request #304 from ypriverol/dev 

    Dev
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Commits on Oct 16, 2023

  1. replace openms by thirdparty openms also for containers

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  2. replace openms by thirdparty openms also for containers

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  3. Merge pull request #305 from ypriverol/dev 

    Dev
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Commits on Oct 18, 2023

  1. Merge pull request #4 from bigbio/dev 

    u
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  2. add tolerance unit warning

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  3. set mass_acc_automatic

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  4. Update workflows/dia.nf 

    Co-authored-by: Julianus Pfeuffer <julianus.pfeuffer@pfizer.com>
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  5. Merge pull request #306 from daichengxin/dev 

    Add warning info and set mass accurancy automatic for DIA when Dalton input(Don't merge)
    @ypriverol
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  6. fixed bugs

    @daichengxin
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  7. Update dia.nf

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  8. Merge pull request #307 from daichengxin/dev 

    fixed errors
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  9. Merge pull request #118 from bigbio/dev 

    Major PR for version 1.2 of quantms
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Commits on Oct 19, 2023

  1. Update diann_convert.py

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  2. Update diann_convert.py

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Commits on Oct 21, 2023

  1. Merge pull request #121 from daichengxin/dev 

    Update diann_convert.py
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  2. Replace by new version of openms 3.1.0

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  3. commeting dev containers

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  4. Merge pull request #308 from ypriverol/dev 

    Release of Openms 3.1.0
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  5. Merge pull request #122 from bigbio/dev 

    update openms 3.1.0
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Commits on Oct 23, 2023

  1. commeting dev containers

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  2. Merge pull request #310 from ypriverol/dev 

    Dev
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  3. Merge pull request #124 from bigbio/dev 

    minor changes
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  4. added node packages to gitignore

    @jspaezp
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  5. Merge branch 'feature/bruker_data' of github.com:TalusBio/quantms int… 

    …o feature/bruker_data
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  6. updated decompression

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  7. changed container for dotd2mqc

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Commits on Oct 24, 2023

  1. Merge branch 'dev' into feature/bruker_data

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  2. Merge pull request #312 from TalusBio/feature/bruker_data 

    Fallback version reporting of zip
    @ypriverol
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  3. added retention

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Commits on Oct 25, 2023

  1. Merge branch 'dev' into feature/retain_final_speclib

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Commits on Oct 27, 2023

  1. update dda and bruker data report

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  2. Update mzml_statistics.py

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  3. Merge pull request #5 from bigbio/dev 

    dev
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  4. Merge pull request #313 from TalusBio/feature/retain_final_speclib 

    Feature/retain final speclib
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  5. Merge pull request #314 from daichengxin/dev 

    update dda and bruker report
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  6. Merge pull request #1 from bigbio/dev 

    small changes.
    @ypriverol
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  7. Update main.nf

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  8. Update main.nf

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  9. Update modules/local/openms/thirdparty/searchenginemsgf/main.nf 

    Co-authored-by: Julianus Pfeuffer <julianus.pfeuffer@pfizer.com>
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  10. Modify Luciphor2 module.

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  11. Merge pull request #316 from ypriverol/dev 

    Error fix in msgf+ module.
    @ypriverol
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Commits on Oct 30, 2023

  1. Update CHANGELOG.md

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  2. improving doc

    @daichengxin
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  3. Merge branch 'dev' into dev

    @ypriverol
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  4. Merge pull request #319 from daichengxin/dev 

    Improving doc
    @ypriverol
    ypriverol committed Oct 30, 2023
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  5. fixed spectrum reference for bruker data

    @daichengxin
    daichengxin committed Oct 30, 2023
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  6. fixed

    @daichengxin
    daichengxin committed Oct 30, 2023
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  7. Delete test.py

    @daichengxin
    daichengxin committed Oct 30, 2023
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  8. del

    @daichengxin
    daichengxin committed Oct 30, 2023
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  9. Merge branch 'dev' into dev

    @ypriverol
    ypriverol committed Oct 30, 2023
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  10. Merge pull request #321 from daichengxin/dev 

    standardize spectrum identifier for bruker data
    @ypriverol
    ypriverol committed Oct 30, 2023
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Commits on Oct 31, 2023

  1. Merge pull request #125 from bigbio/dev 

    Multiple changes before the release.
    @ypriverol
    ypriverol committed Oct 31, 2023
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  2. use https instead of http for shields.io resources

    @fabianegli
    fabianegli committed Oct 31, 2023
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  3. add doctests for overlapping coverage

    @fabianegli
    fabianegli committed Oct 31, 2023
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  4. use diann_version_id in ValueError if it is unsupported

    @fabianegli
    fabianegli committed Oct 31, 2023
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  5. more consistent spacing for if, else and braces

    @fabianegli
    fabianegli committed Oct 31, 2023
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Commits on Nov 1, 2023

  1. Update README.md 

    Co-authored-by: Fabian Egli <fabianegli@users.noreply.github.com>
    @ypriverol @fabianegli
    ypriverol and fabianegli committed Nov 1, 2023
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  2. Update README.md 

    Co-authored-by: Fabian Egli <fabianegli@users.noreply.github.com>
    @ypriverol @fabianegli
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  3. Update workflows/dia.nf 

    Co-authored-by: Fabian Egli <fabianegli@users.noreply.github.com>
    @ypriverol @fabianegli
    ypriverol and fabianegli committed Nov 1, 2023
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  4. Update workflows/dia.nf 

    Co-authored-by: Fabian Egli <fabianegli@users.noreply.github.com>
    @ypriverol @fabianegli
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  5. Update workflows/dia.nf 

    Co-authored-by: Fabian Egli <fabianegli@users.noreply.github.com>
    @ypriverol @fabianegli
    ypriverol and fabianegli committed Nov 1, 2023
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  6. Merge pull request #126 from fabianegli/changes-from-review-of-pr120 

    use https instead of http for shields.io resources
    @ypriverol
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  7. match index type before assignment 

    Otherwise MyPy raises an error.
    @fabianegli
    fabianegli committed Nov 1, 2023
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  8. fix the check for directory existence

    @fabianegli
    fabianegli committed Nov 1, 2023
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  9. Merge pull request #127 from fabianegli/mypy-found-issue-fixes 

    Mypy found issue fixes
    @ypriverol
    ypriverol committed Nov 1, 2023
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  10. add tests for overlapping peptides

    @fabianegli
    fabianegli committed Nov 1, 2023
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  11. Update bin/diann_convert.py 

    Co-authored-by: Fabian Egli <fabianegli@users.noreply.github.com>
    @ypriverol @fabianegli
    ypriverol and fabianegli committed Nov 1, 2023
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  12. remove unused code

    @fabianegli
    fabianegli committed Nov 1, 2023
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  13. promote DiannDirectory to a full class 

    As it is, there is too much logic in this class for it to be a dataclass.
    @fabianegli
    fabianegli committed Nov 1, 2023
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  14. remove unused argument and simplify function 

    The only_first argument was never used in any function call in the script. It is also very easy to get the whole list of files matching a glob, if necessary.
    @fabianegli
    fabianegli committed Nov 1, 2023
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  15. more descriptive function name

    @fabianegli
    fabianegli committed Nov 1, 2023
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  16. do not overwrite builtin function dir

    @fabianegli
    fabianegli committed Nov 1, 2023
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  17. remove unnecessary parenthesis in tuple unpacking

    @fabianegli
    fabianegli committed Nov 1, 2023
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  18. do not repeatedly zip

    @fabianegli
    fabianegli committed Nov 1, 2023
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  19. fix and add type annotations and add type conversions

    @fabianegli
    fabianegli committed Nov 1, 2023
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  20. improve readability of validate_diann_version

    @fabianegli
    fabianegli committed Nov 1, 2023
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  21. format with black

    @fabianegli
    fabianegli committed Nov 1, 2023
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  22. extract the diann version as a property 

    and make validate_diann_version a method
    @fabianegli
    fabianegli committed Nov 1, 2023
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  23. more consistent spacing for if, else in nf files

    @fabianegli
    fabianegli committed Nov 1, 2023
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  24. Merge pull request #128 from fabianegli/more-fixes-for-type-annotations 

    More fixes for type annotations
    @ypriverol
    ypriverol committed Nov 1, 2023
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  25. remove redundant test cases

    @fabianegli
    fabianegli committed Nov 1, 2023
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  26. use correct test case result

    @fabianegli
    fabianegli committed Nov 1, 2023
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  27. fix too many unpackings and zips

    @fabianegli
    fabianegli committed Nov 1, 2023
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Commits on Nov 2, 2023

  1. set release date and release version

    @fabianegli
    fabianegli committed Nov 2, 2023
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  2. adapt multiqc_config.yaml to new version

    @fabianegli
    fabianegli committed Nov 2, 2023
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  3. link to the nf-core quantms repo

    @fabianegli
    fabianegli committed Nov 2, 2023
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  4. Merge pull request #131 from fabianegli/release-preparation 

    set release date and release version
    @ypriverol
    ypriverol committed Nov 2, 2023
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