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Merge pull request #981 from nf-core/tower-actions-testing
Tower actions testing
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,92 @@ | ||
| name: full-sized tests on cloud providers | ||
| run-name: Submitting workflow to all cloud providers using full sized data | ||
| on: | ||
| workflow_dispatch: | ||
| inputs: | ||
| platform: | ||
| description: 'Platform to run test' | ||
| required: true | ||
| default: 'all' | ||
| type: choice | ||
| options: | ||
| - all | ||
| - aws | ||
| - azure | ||
| - gcp | ||
| jobs: | ||
| run-full-tests-on-aws: | ||
| if: ${{ github.event.inputs.platform == 'all' || github.event.inputs.platform == 'aws' }} | ||
| runs-on: self-hosted | ||
| strategy: | ||
| matrix: | ||
| aligner: ["star_salmon", "star_rsem"] | ||
| steps: | ||
| - uses: seqeralabs/action-tower-launch@v1 | ||
| with: | ||
| workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }} | ||
| access_token: ${{ secrets.TOWER_ACCESS_TOKEN }} | ||
| compute_env: ${{ secrets.TOWER_CE_AWS_CPU }} | ||
| workdir: "${{ secrets.TOWER_BUCKET_AWS }}/work/rnaseq/work-${{ github.sha }}" | ||
| run_name: "aws_rnaseq_full_${{ matrix.aligner }}" | ||
| profiles: test_full_aws | ||
| parameters: | | ||
| { | ||
| "hook_url": "${{ secrets.MEGATESTS_ALERTS_SLACK_HOOK_URL }}", | ||
| "outdir": "${{ secrets.TOWER_BUCKET_AWS }}/rnaseq/results-${{ github.sha }}/aligner_${{ matrix.aligner }}" | ||
| } | ||
| wait: false | ||
| - uses: actions/upload-artifact@v3 | ||
| with: | ||
| name: Tower debug log file | ||
| path: tower_action_*.log | ||
| run-full-tests-on-gcp: | ||
| if: ${{ github.event.inputs.platform == 'all' || github.event.inputs.platform == 'gcp' }} | ||
| runs-on: self-hosted | ||
| strategy: | ||
| matrix: | ||
| aligner: ["star_salmon", "star_rsem"] | ||
| steps: | ||
| - uses: seqeralabs/action-tower-launch@v1 | ||
| with: | ||
| workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }} | ||
| access_token: ${{ secrets.TOWER_ACCESS_TOKEN }} | ||
| compute_env: ${{ secrets.TOWER_CE_GCP_CPU }} | ||
| workdir: "${{ secrets.TOWER_BUCKET_GCP }}/work/rnaseq/work-${{ github.sha }}" | ||
| run_name: "gcp_rnaseq_full_${{ matrix.aligner }}" | ||
| profiles: test_full_gcp | ||
| parameters: | | ||
| { | ||
| "hook_url": "${{ secrets.MEGATESTS_ALERTS_SLACK_HOOK_URL }}", | ||
| "outdir": "${{ secrets.TOWER_BUCKET_GCP }}/rnaseq/results-${{ github.sha }}/aligner_${{ matrix.aligner }}" | ||
| } | ||
| wait: false | ||
| - uses: actions/upload-artifact@v3 | ||
| with: | ||
| name: Tower debug log file | ||
| path: tower_action_*.log | ||
| run-full-tests-on-azure: | ||
| if: ${{ github.event.inputs.platform == 'all' || github.event.inputs.platform == 'azure' }} | ||
| runs-on: self-hosted | ||
| strategy: | ||
| matrix: | ||
| aligner: ["star_salmon", "star_rsem"] | ||
| steps: | ||
| - uses: seqeralabs/action-tower-launch@v1 | ||
| with: | ||
| workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }} | ||
| access_token: ${{ secrets.TOWER_ACCESS_TOKEN }} | ||
| compute_env: ${{ secrets.TOWER_CE_AZURE_CPU }} | ||
| workdir: "${{ secrets.TOWER_BUCKET_AZURE }}/work/rnaseq/work-${{ github.sha }}" | ||
| run_name: "azure_rnaseq_full_${{ matrix.aligner }}" | ||
| profiles: test_full_azure | ||
| parameters: | | ||
| { | ||
| "hook_url": "${{ secrets.MEGATESTS_ALERTS_SLACK_HOOK_URL }}", | ||
| "outdir": "${{ secrets.TOWER_BUCKET_AZURE }}/rnaseq/results-${{ github.sha }}/aligner_${{ matrix.aligner }}", | ||
| "igenomes_base": "${{ secrets.TOWER_IGENOMES_BASE_AZURE }}" | ||
| } | ||
| wait: false | ||
| - uses: actions/upload-artifact@v3 | ||
| with: | ||
| name: Tower debug log file | ||
| path: tower_action_*.log |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,79 @@ | ||
| name: small-sized tests on cloud providers | ||
| run-name: Submitting workflow to all cloud providers using small sized data | ||
| on: | ||
| workflow_dispatch: | ||
| inputs: | ||
| platform: | ||
| description: 'Platform to run test' | ||
| required: true | ||
| default: 'all' | ||
| type: choice | ||
| options: | ||
| - all | ||
| - aws | ||
| - azure | ||
| - gcp | ||
| jobs: | ||
| run-small-tests-on-aws: | ||
| if: ${{ github.event.inputs.platform == 'all' || github.event.inputs.platform == 'aws' }} | ||
| runs-on: self-hosted | ||
| steps: | ||
| - uses: seqeralabs/action-tower-launch@v1 | ||
| with: | ||
| workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }} | ||
| access_token: ${{ secrets.TOWER_ACCESS_TOKEN }} | ||
| compute_env: ${{ secrets.TOWER_CE_AWS_CPU }} | ||
| workdir: "${{ secrets.TOWER_BUCKET_AWS }}/work/rnaseq/work-${{ github.sha }}" | ||
| run_name: "aws_rnaseq_small" | ||
| profiles: test | ||
| parameters: | | ||
| { | ||
| "outdir": "${{ secrets.TOWER_BUCKET_AWS }}/rnaseq/results-test-${{ github.sha }}" | ||
| } | ||
| wait: false | ||
| - uses: actions/upload-artifact@v3 | ||
| with: | ||
| name: Tower debug log file | ||
| path: tower_action_*.log | ||
| run-small-tests-on-gcp: | ||
| if: ${{ github.event.inputs.platform == 'all' || github.event.inputs.platform == 'gcp' }} | ||
| runs-on: self-hosted | ||
| steps: | ||
| - uses: seqeralabs/action-tower-launch@v1 | ||
| with: | ||
| workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }} | ||
| access_token: ${{ secrets.TOWER_ACCESS_TOKEN }} | ||
| compute_env: ${{ secrets.TOWER_CE_GCP_CPU }} | ||
| workdir: "${{ secrets.TOWER_BUCKET_GCP }}/work/rnaseq/work-${{ github.sha }}" | ||
| run_name: "gcp_rnaseq_small" | ||
| profiles: test | ||
| parameters: | | ||
| { | ||
| "outdir": "${{ secrets.TOWER_BUCKET_GCP }}/rnaseq/results-test-${{ github.sha }}" | ||
| } | ||
| wait: false | ||
| - uses: actions/upload-artifact@v3 | ||
| with: | ||
| name: Tower debug log file | ||
| path: tower_action_*.log | ||
| run-small-tests-on-azure: | ||
| if: ${{ github.event.inputs.platform == 'all' || github.event.inputs.platform == 'azure' }} | ||
| runs-on: self-hosted | ||
| steps: | ||
| - uses: seqeralabs/action-tower-launch@v1 | ||
| with: | ||
| workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }} | ||
| access_token: ${{ secrets.TOWER_ACCESS_TOKEN }} | ||
| compute_env: ${{ secrets.TOWER_CE_AZURE_CPU }} | ||
| workdir: "${{ secrets.TOWER_BUCKET_AZURE }}/work/rnaseq/work-${{ github.sha }}" | ||
| run_name: "azure_rnaseq_small" | ||
| profiles: test | ||
| parameters: | | ||
| { | ||
| "outdir": "${{ secrets.TOWER_BUCKET_AZURE }}/rnaseq/results-test-${{ github.sha }}" | ||
| } | ||
| wait: false | ||
| - uses: actions/upload-artifact@v3 | ||
| with: | ||
| name: Tower debug log file | ||
| path: tower_action_*.log |