Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Tower actions testing #981

Merged
merged 26 commits into from
Mar 29, 2023
Merged

Tower actions testing #981

merged 26 commits into from
Mar 29, 2023

Conversation

robsyme
Copy link
Contributor

@robsyme robsyme commented Mar 28, 2023

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs- [ ] If necessary, also make a PR on the nf-core/rnaseq branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@robsyme robsyme changed the base branch from master to dev March 28, 2023 15:34
@robsyme robsyme force-pushed the tower-actions-testing branch 2 times, most recently from f4a49c0 to ef18a5e Compare March 28, 2023 15:46
@github-actions
Copy link

This PR is against the master branch ❌

  • Do not close this PR
  • Click Edit and change the base to dev
  • This CI test will remain failed until you push a new commit

Hi @robsyme,

It looks like this pull-request is has been made against the nf-core/rnaseq master branch.
The master branch on nf-core repositories should always contain code from the latest release.
Because of this, PRs to master are only allowed if they come from the nf-core/rnaseq dev branch.

You do not need to close this PR, you can change the target branch to dev by clicking the "Edit" button at the top of this page.
Note that even after this, the test will continue to show as failing until you push a new commit.

Thanks again for your contribution!

@github-actions
Copy link

github-actions bot commented Mar 28, 2023 •
edited
Loading

nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit fe39f59

+| ✅ 153 tests passed       |+
#| ❔   4 tests were ignored |#
!| ❗   3 tests had warnings |!

❗ Test warnings:

  • nextflow_config - Config manifest.version should end in dev: '3.11.0'
  • readme - README did not have a Nextflow minimum version mentioned in Quick Start section.
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your prefered methods description, e.g. add publication citation for this pipeline

❔ Tests ignored:

  • files_unchanged - File ignored due to lint config: assets/email_template.html
  • files_unchanged - File ignored due to lint config: assets/email_template.txt
  • files_unchanged - File ignored due to lint config: lib/NfcoreSchema.groovy
  • files_unchanged - File ignored due to lint config: lib/NfcoreTemplate.groovy

✅ Tests passed:

Run details

  • nf-core/tools version 2.7.2
  • Run at 2023-03-29 16:58:10

drpatelh
drpatelh reviewed Mar 29, 2023
View reviewed changes
Copy link
Member

@drpatelh drpatelh left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Some comments!!!!

.github/workflows/cloud_tests_full.yml Outdated Show resolved Hide resolved
.github/workflows/cloud_tests_small.yml Outdated Show resolved Hide resolved
.github/workflows/cloud_tests_full.yml Outdated Show resolved Hide resolved
.github/workflows/cloud_tests_small.yml Outdated Show resolved Hide resolved
.github/workflows/cloud_tests_small.yml Outdated Show resolved Hide resolved
.github/workflows/cloud_tests_full.yml Outdated Show resolved Hide resolved
.github/workflows/cloud_tests_full.yml Outdated Show resolved Hide resolved
.github/workflows/cloud_tests_small.yml Outdated Show resolved Hide resolved
.github/workflows/cloud_tests_small.yml Outdated Show resolved Hide resolved
.github/workflows/cloud_tests_small.yml Outdated Show resolved Hide resolved
@drpatelh drpatelh marked this pull request as ready for review March 29, 2023 13:10
drpatelh
drpatelh approved these changes Mar 29, 2023
View reviewed changes
Copy link
Member

@drpatelh drpatelh left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Great work!!

@drpatelh drpatelh merged commit 5b2b523 into dev Mar 29, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers

@drpatelh drpatelh drpatelh approved these changes

Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.

None yet
2 participants
@robsyme @drpatelh