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Mini environment fix for #113, updating recipes too
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apeltzer committed Nov 5, 2018
1 parent 2116287 commit e45e392
Showing 1 changed file with 16 additions and 16 deletions.
32 changes: 16 additions & 16 deletions environment.yml
Original file line number Diff line number Diff line change
Expand Up @@ -6,22 +6,22 @@ channels:
- conda-forge
- defaults
dependencies:
- conda-forge::openjdk=8.0.144 # Needed for FastQC - conda build hangs without this
- fastqc=0.11.8
- trim-galore=0.5.0
- star=2.6.1b
- hisat2=2.1.0
- picard=2.18.14
- bioconductor-dupradar=1.8.0
- anaconda::openjdk=8.0.152 # Needed for FastQC - conda build hangs without this
- bioconda::fastqc=0.11.8
- bioconda::trim-galore=0.5.0
- bioconda::star=2.6.1b
- bioconda::hisat2=2.1.0
- bioconda::picard=2.18.15
- bioconda::bioconductor-dupradar=1.10.0
- conda-forge::r-data.table=1.11.4
- conda-forge::r-gplots=3.0.1
- bioconductor-edger=3.20.7
- bioconda::bioconductor-edger=3.22.5
- conda-forge::r-markdown=0.8
- preseq=2.0.3
- rseqc=2.6.4
- samtools=1.9
- stringtie=1.3.4
- subread=1.6.2
- gffread=0.9.9
- deeptools=3.1.3
- multiqc=1.6
- bioconda::preseq=2.0.3
- bioconda::rseqc=2.6.4
- bioconda::samtools=1.9
- bioconda::stringtie=1.3.4
- bioconda::subread=1.6.2
- bioconda::gffread=0.9.9
- bioconda::deeptools=3.1.3
- bioconda::multiqc=1.6

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