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Remove tags from all nf-test files #1329

Merged
merged 2 commits into from
Jun 20, 2024
Merged

Remove tags from all nf-test files #1329

merged 2 commits into from
Jun 20, 2024

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drpatelh
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Based on @adamrtalbot comment here #1324 (comment) we no longer need to explicitly use the tag entry within *.nf.test files to track the dependency tree between modules/subworkflows/workflows. The nf-test CI within rnaseq checks for dependencies based on files (see adamrtalbot/detect-nf-test-changes) rather than tags.

nf-test will add native functionality to check for changes in the next release via askimed/nf-test#216. At this point we should be able to migrate to using this for both CI and local testing.

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github-actions bot commented Jun 20, 2024 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 9dbdd2c

+| ✅ 173 tests passed       |+
#| ❔   9 tests were ignored |#
!| ❗   7 tests had warnings |!

❗ Test warnings:

  • files_exist - File not found: assets/multiqc_config.yml
  • files_exist - File not found: .github/workflows/awstest.yml
  • files_exist - File not found: .github/workflows/awsfulltest.yml
  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 2.14.1
  • Run at 2024-06-20 13:37:08

@drpatelh drpatelh enabled auto-merge June 20, 2024 13:49
@drpatelh drpatelh merged commit 53e59a8 into nf-core:dev Jun 20, 2024
76 checks passed
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@adamrtalbot adamrtalbot adamrtalbot approved these changes

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@drpatelh @adamrtalbot