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FIX: update bgziptabix module #654

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FIX: update bgziptabix module

FIX: update bgziptabix module #654

Triggered via pull request June 7, 2023 16:35
@maxulyssemaxulysse
synchronize #1078
maxulysse:patch_modules
Status Success
Total duration 18m 18s
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pytest-workflow.yml

on: pull_request
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42 warnings
validation_checks docker NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
validation_checks docker NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
snpeff docker NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
snpeff docker NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
vep docker NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
vep docker NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
skip_all_qc docker NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
merge docker NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
skip_all_qc docker NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
save_mapped_only docker NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
merge docker NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
tiddit docker NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
tumor_normal_pair docker NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
save_output_as_bam_only docker NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
save_output_as_bam_only docker NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
save_mapped_only docker NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
tumor_normal_pair docker NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
skip_all_qc singularity NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
snpeff singularity NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
tiddit docker NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
save_output_as_bam_only singularity NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
vep singularity NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
vep singularity NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
snpeff singularity NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
save_output_as_bam_only singularity NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
intervals docker NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
save_mapped_only singularity NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
tiddit singularity NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
skip_markduplicates docker NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
save_mapped_only singularity NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
tumor_normal_pair singularity NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
concatenate_vcfs docker NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
intervals docker NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
tiddit singularity NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
tumor_normal_pair singularity NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
skip_all_qc singularity NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
concatenate_vcfs docker NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
skip_markduplicates docker NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
intervals singularity NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
skip_markduplicates singularity NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
intervals singularity NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
skip_markduplicates singularity NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.