FIX: update bgziptabix module #654
pytest-workflow.yml
on: pull_request
Check for changes
5s
Matrix: test
Annotations
42 warnings
validation_checks docker NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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validation_checks docker NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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snpeff docker NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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snpeff docker NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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vep docker NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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vep docker NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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skip_all_qc docker NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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merge docker NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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skip_all_qc docker NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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save_mapped_only docker NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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merge docker NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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tiddit docker NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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tumor_normal_pair docker NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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save_output_as_bam_only docker NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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save_output_as_bam_only docker NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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save_mapped_only docker NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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tumor_normal_pair docker NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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skip_all_qc singularity NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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snpeff singularity NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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tiddit docker NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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save_output_as_bam_only singularity NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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vep singularity NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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vep singularity NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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snpeff singularity NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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save_output_as_bam_only singularity NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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intervals docker NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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save_mapped_only singularity NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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tiddit singularity NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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skip_markduplicates docker NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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save_mapped_only singularity NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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tumor_normal_pair singularity NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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concatenate_vcfs docker NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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intervals docker NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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tiddit singularity NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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tumor_normal_pair singularity NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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skip_all_qc singularity NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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concatenate_vcfs docker NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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skip_markduplicates docker NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
|
intervals singularity NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
|
skip_markduplicates singularity NF latest-everything
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
|
intervals singularity NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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skip_markduplicates singularity NF 22.10.1
Node.js 12 actions are deprecated. Please update the following actions to use Node.js 16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2022-09-22-github-actions-all-actions-will-begin-running-on-node16-instead-of-node12/.
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