pytest-workflow

Update modules #1008

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Triggered via pull request August 17, 2023 08:35

nf-core-bot

synchronize #1180

update_modules

Status Success

Total duration 58m 0s

Artifacts –

pytest-workflow.yml

on: pull_request

Check for changes

Matrix: test

Annotations

50 warnings

validation_checks docker NF 23.04.0

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

validation_checks docker NF latest-everything

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

snpeff docker NF 23.04.0

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

snpeff docker NF latest-everything

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

msisensorpro docker NF latest-everything

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

msisensorpro docker NF 23.04.0

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

vep docker NF 23.04.0

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

merge docker NF 23.04.0

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

vep docker NF latest-everything

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

skip_all_qc docker NF 23.04.0

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

skip_all_qc docker NF latest-everything

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

save_output_as_bam_only docker NF 23.04.0

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

save_mapped_only docker NF latest-everything

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

save_output_as_bam_only docker NF latest-everything

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

gatk4/markduplicates docker NF 23.04.0

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

merge docker NF latest-everything

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

sentieon/dedup docker NF 23.04.0

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

gatk4/markduplicates docker NF latest-everything

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

umi docker NF latest-everything

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

bwamem2 docker NF latest-everything

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

sentieon/dedup docker NF latest-everything

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

save_mapped_only docker NF 23.04.0

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

tumor_normal_pair docker NF latest-everything

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

tumor_normal_pair docker NF 23.04.0

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

bwamem docker NF latest-everything

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

umi docker NF 23.04.0

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

bwamem docker NF 23.04.0

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

haplotypecaller docker NF latest-everything

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

joint_germline docker NF latest-everything

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

haplotypecaller docker NF 23.04.0

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

dragmap docker NF latest-everything

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

dragmap docker NF 23.04.0

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

joint_germline docker NF 23.04.0

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

cache docker NF 23.04.0

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

bwamem2 docker NF 23.04.0

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

cache docker NF latest-everything

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

concatenate_vcfs docker NF latest-everything

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

skip_markduplicates docker NF 23.04.0

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

sentieon/bwamem docker NF latest-everything

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

gatk4_spark docker NF 23.04.0

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

skip_markduplicates docker NF latest-everything

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

sentieon/bwamem docker NF 23.04.0

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

cnvkit docker NF latest-everything

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

gatk4_spark docker NF latest-everything

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

sentieon/haplotyper docker NF 23.04.0

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

concatenate_vcfs docker NF 23.04.0

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

cnvkit docker NF 23.04.0

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

sentieon/haplotyper docker NF latest-everything

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

deepvariant docker NF latest-everything

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

deepvariant docker NF 23.04.0

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/