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@FriederikeHanssen
FriederikeHanssen committed Aug 17, 2023
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -40,6 +40,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- [#1173](https://github.com/nf-core/sarek/pull/1173) - Fixed duplicated entries in joint germline recalibrated VCF ([#966](https://github.com/nf-core/sarek/pull/966), [#1102](https://github.com/nf-core/sarek/pull/1102)),
fixed grouping joint germline recalibrated VCF ([#1137](https://github.com/nf-core/sarek/pull/1137))
- [#1177](https://github.com/nf-core/sarek/pull/1177) - Fix status inference when using nf-validation plugin
- [#1183](https://github.com/nf-core/sarek/pull/1183) - Add docs for concatentated germline variants

### Dependencies

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1 change: 0 additions & 1 deletion docs/output.md
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Expand Up @@ -764,7 +764,6 @@ It requires a normal sample for each tumour to differentiate the somatic and ger

Germline VCFs from `DeepVariant`, `FreeBayes`, `HaplotypeCaller`, `Haplotyper`, `Manta`, `bcftools mpileup`, `Strelka2`, or `Tiddit` are concatenated with `bcftools concat`. The field `SOURCE` is added to the VCF header to report the variant caller.


<details markdown="1">
<summary>Concatenated VCF-files for normal samples</summary>

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