update MANTA/STRELKA modules

nf-core · Jun 1, 2023 · 313480b · 313480b
1 parent a9741a2
commit 313480b
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Showing 6 changed files with 12 additions and 7 deletions.
diff --git a/modules.json b/modules.json
@@ -288,17 +288,17 @@
                     },
                     "manta/germline": {
                         "branch": "master",
-                        "git_sha": "0460d316170f75f323111b4a2c0a2989f0c32013",
+                        "git_sha": "80dbd95c558a0ebb2123d95f50c093a7f714a0d7",
                         "installed_by": ["modules"]
                     },
                     "manta/somatic": {
                         "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
+                        "git_sha": "80dbd95c558a0ebb2123d95f50c093a7f714a0d7",
                         "installed_by": ["modules"]
                     },
                     "manta/tumoronly": {
                         "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
+                        "git_sha": "80dbd95c558a0ebb2123d95f50c093a7f714a0d7",
                         "installed_by": ["modules"]
                     },
                     "mosdepth": {
@@ -379,16 +379,16 @@
                     "snpeff/snpeff": {
                         "branch": "master",
                         "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
-                        "installed_by": ["modules", "vcf_annotate_snpeff"]
+                        "installed_by": ["vcf_annotate_snpeff", "modules"]
                     },
                     "strelka/germline": {
                         "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
+                        "git_sha": "80dbd95c558a0ebb2123d95f50c093a7f714a0d7",
                         "installed_by": ["modules"]
                     },
                     "strelka/somatic": {
                         "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
+                        "git_sha": "80dbd95c558a0ebb2123d95f50c093a7f714a0d7",
                         "installed_by": ["modules"]
                     },
                     "svdb/merge": {
@@ -399,7 +399,7 @@
                     "tabix/bgziptabix": {
                         "branch": "master",
                         "git_sha": "01b3b2509d76625b6d6cd613b349fb4777712a15",
-                        "installed_by": ["modules", "vcf_annotate_snpeff"]
+                        "installed_by": ["vcf_annotate_snpeff", "modules"]
                     },
                     "tabix/tabix": {
                         "branch": "master",

diff --git a/modules/nf-core/manta/germline/main.nf b/modules/nf-core/manta/germline/main.nf
diff --git a/modules/nf-core/manta/somatic/main.nf b/modules/nf-core/manta/somatic/main.nf
diff --git a/modules/nf-core/manta/tumoronly/main.nf b/modules/nf-core/manta/tumoronly/main.nf
diff --git a/modules/nf-core/strelka/germline/main.nf b/modules/nf-core/strelka/germline/main.nf
diff --git a/modules/nf-core/strelka/somatic/main.nf b/modules/nf-core/strelka/somatic/main.nf